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mmu_circ2610507B11Rik_1229
Basic information of circular RNA
PanCircBase ID:
mmu_circ2610507B11Rik_1229
mm39_Chr. Position ID:
chr11|78174925|78179121|+
Gene name:
2610507B11Rik
Transcript:
ENSMUST00000010421.7
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
9
Exon/intron indexes:
28,29,30,31,32,33,34,35,36
Exon/intron offsets:
0,639,1338,1575,2413,3196,3584,3832,4065
Genomic length:
4196
Exon/intron sizes in nt:
1,83,12,21,56,12,21,81,00,00,00,00,000
Flanking exon/introns:
chr11:78173984-78174925|chr11:78179121-78179766
Splice length:
1229
Other database IDs:
CIRCpedia: MMU_CIRCpedia_29858, circAtlas: mmu-2610507B11Rik_0009
Human Ortholog IDs:
Mature spliced Sequence:
ACTGGAACCAGCCAGCGGAAGCCCAGCAAGCCCAGCAAGTCCAGAGGATCATTTCACGTTGTAATTGCCGGATGTACTATATTAGCTACAGCCATGACATTGATCCTGAGCTAGCAACTCAGATTAAGCCACCTGAGGTTCATGAGAACCAGGAAAAGGAGGATCTCTTAAAGAAGCAGGAAGGGGCTGTGGATACTTTTACTCTCATCCACCACGAATTGGAAATTTCTACCAACCCAGCTCAGTATGCTATGATTCTGGACATTGTCAACAACCTGCTTCTCCACGTAGAACCCAAGCGGAAGGAGCATAGTGAAAAGAAACAGCGCGTGAGGTTCCAGCTGGAGATCTCTAGCAATCCTGAGGAGCAGCGCAGCAGCATACTACACCTGCAGGAGGCTGTGCGGCAGCATGTGGCCCAGATAAGGCACCTAGAGAAGCAGATGTACTCTATCATGAAGTCTTTACAGGATGACAGCAAGAATGAGAACTTGCTGGACCTGAACCAAAAACTTCAGTTACAGCTGAACCAAGAAAAGGCCAACCTGCAGCTGGAAAGCGAAGAACTGAACATCCTCATCAGATGTTTTAAGGATTTCCAACTGCAGCGAGCCAATAAAATGGAGCTTCGAAAACAACAGGAAGATGTGAGTGTGGTCCGTCGCACCGAGTTTTACTTTGCTCAGGCACGTTGGCGCCTGACAGAAGAAGATGGACAGCTGGGCATCGCTGAGCTGGAGCTACAGAGGTTCCTTTACAGCAAGGTGAATAAATCTGATGACACAGCAGAACATCTCCTGGAGTTGGGCTGGTTCACTATGAACAACCTTCTCCCTAATGCTATTTATAAGGTGGTTCTAAGGCCCCAGAGTTCCTGCCAGTCTGGGAGACAGCTAGCCCTCCGCCTCTTCAGCAAAGTCCGGCCACCTGTTGGTGGTATCTCTGTTAAGGAACACTTTGAGGTAAATGTGGTGCCTCTCACCATCCAGCTGTCCCACCGGTTCTTCCATAGAATGATGGGCTTTTTCTTTCCTGGTCGAAATGTAGAAGATGATGAAGTTGGTGATGAAGAGGATAAGTCCAAACTGGTGACTACTGGAATACCAGTTGTAAAGCCTCGGCAGCTGATAGCAACAGATGATGCAGTACCACTGGGCTCCGGGAAGGGCGTGGCACAGGGCTTGACCAGGAGTTCTGGAGTCAGAAGATCATTTCGCAAATTACCTGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATGATGCAGTACCACTGGGC
60.11
GATCCTCTGGACTTGCTGGG
59.82
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GATGCAGTACCACTGGGCTC
60.46
GATCCTCTGGACTTGCTGGG
59.82
140
PCR template sequence:
AGCAACAGATGATGCAGTACCACTGGGCTCCGGGAAGGGCGTGGCACAGGGCTTGACCAGGAGTTCTGGAGTCAGAAGATCATTTCGCAAATTACCTGAGACTGGAACCAGCCAGCGGAAGCCCAGCAAGCCCAGCAAGTCCAGAGGATCATTTCACGTTGTAATTGCCGGATGTACTATATTAGCTACAGCCATGACAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
9
Interacting miRNAs (#binding sites)
mmu-miR-335-3p(2), mmu-miR-217-5p(1), mmu-miR-326-3p(1), mmu-miR-136-5p(1), mmu-miR-433-3p(1), mmu-miR-22-3p(1), mmu-miR-199b-3p(1), mmu-miR-182-5p(1), mmu-miR-199a-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CAAATTACCTGAGACTGGAACCAGCC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRC2610507B11RIK_1229_ORF_1
1.2212
0.313449047
0.999407864
1272
ORF sequence:
ATGTACTATATTAGCTACAGCCATGACATTGATCCTGAGCTAGCAACTCAGATTAAGCCACCTGAGGTTCATGAGAACCAGGAAAAGGAGGATCTCTTAAAGAAGCAGGAAGGGGCTGTGGATACTTTTACTCTCATCCACCACGAATTGGAAATTTCTACCAACCCAGCTCAGTATGCTATGATTCTGGACATTGTCAACAACCTGCTTCTCCACGTAGAACCCAAGCGGAAGGAGCATAGTGAAAAGAAACAGCGCGTGAGGTTCCAGCTGGAGATCTCTAGCAATCCTGAGGAGCAGCGCAGCAGCATACTACACCTGCAGGAGGCTGTGCGGCAGCATGTGGCCCAGATAAGGCACCTAGAGAAGCAGATGTACTCTATCATGAAGTCTTTACAGGATGACAGCAAGAATGAGAACTTGCTGGACCTGAACCAAAAACTTCAGTTACAGCTGAACCAAGAAAAGGCCAACCTGCAGCTGGAAAGCGAAGAACTGAACATCCTCATCAGATGTTTTAAGGATTTCCAACTGCAGCGAGCCAATAAAATGGAGCTTCGAAAACAACAGGAAGATGTGAGTGTGGTCCGTCGCACCGAGTTTTACTTTGCTCAGGCACGTTGGCGCCTGACAGAAGAAGATGGACAGCTGGGCATCGCTGAGCTGGAGCTACAGAGGTTCCTTTACAGCAAGGTGAATAAATCTGATGACACAGCAGAACATCTCCTGGAGTTGGGCTGGTTCACTATGAACAACCTTCTCCCTAATGCTATTTATAAGGTGGTTCTAAGGCCCCAGAGTTCCTGCCAGTCTGGGAGACAGCTAGCCCTCCGCCTCTTCAGCAAAGTCCGGCCACCTGTTGGTGGTATCTCTGTTAAGGAACACTTTGAGGTAAATGTGGTGCCTCTCACCATCCAGCTGTCCCACCGGTTCTTCCATAGAATGATGGGCTTTTTCTTTCCTGGTCGAAATGTAGAAGATGATGAAGTTGGTGATGAAGAGGATAAGTCCAAACTGGTGACTACTGGAATACCAGTTGTAAAGCCTCGGCAGCTGATAGCAACAGATGATGCAGTACCACTGGGCTCCGGGAAGGGCGTGGCACAGGGCTTGACCAGGAGTTCTGGAGTCAGAAGATCATTTCGCAAATTACCTGAGACTGGAACCAGCCAGCGGAAGCCCAGCAAGCCCAGCAAGTCCAGAGGATCATTTCACGTTGTAATTGCCGGATGTACTATATTAGCTACAGCCATGACATTGATCCTGAGCTAG
Peptide sequence:
MYYISYSHDIDPELATQIKPPEVHENQEKEDLLKKQEGAVDTFTLIHHELEISTNPAQYAMILDIVNNLLLHVEPKRKEHSEKKQRVRFQLEISSNPEEQRSSILHLQEAVRQHVAQIRHLEKQMYSIMKSLQDDSKNENLLDLNQKLQLQLNQEKANLQLESEELNILIRCFKDFQLQRANKMELRKQQEDVSVVRRTEFYFAQARWRLTEEDGQLGIAELELQRFLYSKVNKSDDTAEHLLELGWFTMNNLLPNAIYKVVLRPQSSCQSGRQLALRLFSKVRPPVGGISVKEHFEVNVVPLTIQLSHRFFHRMMGFFFPGRNVEDDEVGDEEDKSKLVTTGIPVVKPRQLIATDDAVPLGSGKGVAQGLTRSSGVRRSFRKLPETGTSQRKPSKPSKSRGSFHVVIAGCTILATAMTLILS
IRESfinder result
IRESfinder score
0.464197558
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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