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mmu_circ2210408I21Rik_814
Basic information of circular RNA
PanCircBase ID:
mmu_circ2210408I21Rik_814
mm39_Chr. Position ID:
chr13|77471483|77482482|+
Gene name:
2210408I21Rik
Transcript:
ENSMUST00000168779.3
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
16,17,18,19
Exon/intron offsets:
0,4502,8938,10904
Genomic length:
10999
Exon/intron sizes in nt:
406,157,156,95
Flanking exon/introns:
chr13:77464691-77471483|chr13:77482482-77760645
Splice length:
814
Other database IDs:
circBase: mmu_circ_0000479, CIRCpedia: MMU_CIRCpedia_29620, circAtlas: mmu-2210408I21Rik_0013
circBase: hsa_circ_0073365, circAtlas: hsa-KIAA0825_0013, CIRCpedia: HSA_CIRCpedia_53000
Human Ortholog IDs:
Mature spliced Sequence:
GCATCACGGAGCTTGCTGCTCAGGCAGTGTCTATTGTCCTCAGCAAGTTACCTACAGTGATTGCATGCTTGCCTCCCACAATTAAATACTTCTTTTTTCTGTCTGAGAGAAAAATGTCAAAAAATTTGGCTGAATTGAAGAAAGCTGGCCTGCTTGTCTGGAACTTGATTATAATTATATGTCGGATATTTGAGGATGGGAACACCGTGGAACGTTTAACAGGTTCCTCCCTTGACAGATGGAGTAAGGAGAAACTGGGTTTAATTTGCTTGTGTTTGGAAAGTATCCTGGGAAAGCAAAGCAATCCTAGTCAGCTGACCCAAAAGGTCATCCTGAGCATCGAGCGGCAAAAACCCAACTGGATGGAGCAACAGCTTCTGAAAGCAAGGACACTGAGCATCCAATGTGCATTCACGAGGATGGAGGAAAACTCAGGCTCAGAAGGAGAAGCTGCTCTTGAACTGACTGAGCAGAAAACAAATGCGATGGTCCTGGATCTCTGCCACAAACCAGGTGGCAGCAAGTACCTGCAGCAAATTTATCACATCATGCAGCTCAATGAGGAATATTTAAAAGAACAACTGTTTGCTATGAATGGCTCAGAAGAAAAGCCATTACTCATCAGACCTTTGAAGGTAGCCTTGAGGGATGAAGATCAGCCTCCTGCTTTTAACCCTTTTCATGTGCATAAGGTGGTCAGTGAAAGCATGCTAGATCAGGTGGCCACAGTGACATGGTGCTGCGACTGGTCAAACTTGCTGCCAAATTACCTAGGACTGAATAAGATGACCTTCGGTGCACTATTCAAAAACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CGACTGGTCAAACTTGCTGC
60.04
AATTGTGGGAGGCAAGCATG
59.1
155
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCGACTGGTCAAACTTGCTG
60.04
AATTGTGGGAGGCAAGCATG
59.1
156
PCR template sequence:
ATCAGGTGGCCACAGTGACATGGTGCTGCGACTGGTCAAACTTGCTGCCAAATTACCTAGGACTGAATAAGATGACCTTCGGTGCACTATTCAAAAACAGGCATCACGGAGCTTGCTGCTCAGGCAGTGTCTATTGTCCTCAGCAAGTTACCTACAGTGATTGCATGCTTGCCTCCCACAATTAAATACTTCTTTTTTCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-135a-5p(1), mmu-miR-322-5p(1), mmu-miR-705(1), mmu-miR-129-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TATTCAAAAACAGGCATCACGGAGCT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRC2210408I21RIK_814_ORF_1
0.8185
0.102145794
0.911380399
786
ORF sequence:
ATGTCAAAAAATTTGGCTGAATTGAAGAAAGCTGGCCTGCTTGTCTGGAACTTGATTATAATTATATGTCGGATATTTGAGGATGGGAACACCGTGGAACGTTTAACAGGTTCCTCCCTTGACAGATGGAGTAAGGAGAAACTGGGTTTAATTTGCTTGTGTTTGGAAAGTATCCTGGGAAAGCAAAGCAATCCTAGTCAGCTGACCCAAAAGGTCATCCTGAGCATCGAGCGGCAAAAACCCAACTGGATGGAGCAACAGCTTCTGAAAGCAAGGACACTGAGCATCCAATGTGCATTCACGAGGATGGAGGAAAACTCAGGCTCAGAAGGAGAAGCTGCTCTTGAACTGACTGAGCAGAAAACAAATGCGATGGTCCTGGATCTCTGCCACAAACCAGGTGGCAGCAAGTACCTGCAGCAAATTTATCACATCATGCAGCTCAATGAGGAATATTTAAAAGAACAACTGTTTGCTATGAATGGCTCAGAAGAAAAGCCATTACTCATCAGACCTTTGAAGGTAGCCTTGAGGGATGAAGATCAGCCTCCTGCTTTTAACCCTTTTCATGTGCATAAGGTGGTCAGTGAAAGCATGCTAGATCAGGTGGCCACAGTGACATGGTGCTGCGACTGGTCAAACTTGCTGCCAAATTACCTAGGACTGAATAAGATGACCTTCGGTGCACTATTCAAAAACAGGCATCACGGAGCTTGCTGCTCAGGCAGTGTCTATTGTCCTCAGCAAGTTACCTACAGTGATTGCATGCTTGCCTCCCACAATTAA
Peptide sequence:
MSKNLAELKKAGLLVWNLIIIICRIFEDGNTVERLTGSSLDRWSKEKLGLICLCLESILGKQSNPSQLTQKVILSIERQKPNWMEQQLLKARTLSIQCAFTRMEENSGSEGEAALELTEQKTNAMVLDLCHKPGGSKYLQQIYHIMQLNEEYLKEQLFAMNGSEEKPLLIRPLKVALRDEDQPPAFNPFHVHKVVSESMLDQVATVTWCCDWSNLLPNYLGLNKMTFGALFKNRHHGACCSGSVYCPQQVTYSDCMLASHN
IRESfinder result
IRESfinder score
0.60929229
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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