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mmu_circ1700030K09Rik_791
Basic information of circular RNA
PanCircBase ID:
mmu_circ1700030K09Rik_791
mm39_Chr. Position ID:
chr8|73205202|73212613|+
Gene name:
1700030K09Rik
Transcript:
ENSMUST00000064853.13
CircRNA type:
Exonic circular (circ)RNA
Exon/Intron count:
4
Exon/intron indexes:
4,5,6,7
Exon/intron offsets:
0,3755,6614,7244
Genomic length:
7411
Exon/intron sizes in nt:
7,44,54,96,167
Flanking exon/introns:
chr8:73203585-73205202|chr8:73212613-73213872
Splice length:
791
Other database IDs:
circAtlas: mmu-1700030K09Rik_0001
Human Ortholog IDs:
Mature spliced Sequence:
ATTTTAGAATTAATATTTTGTCGATTGATGATCTGGTTCTGGCTGACGGAGACAAATCAGATGGGGACCAGAGAGAGGAAGACTGTGTAAGGGAAGGGATTTCAGTCAGAAGCTCCTCACCCACATCACCTACTCGACTGGAAGCGCAGATGTGGCCCAAGAATTGTGTGTTTCAGGGCACAGCCACCGTGGTTGGGGATGGAGAGGGTCTTACCACTGAGAGTGACGTCTCAGAGCCCCCGGGGACCAGCTCCTCAGCAGCTGTCCAGTCTCACAGTATGTCCAGGGCCCTCACTGCAAGCCCAGCTTACTCAGAGGATTTTGAGCAGTTCTCTGGTCCCTTGGCCTTGGAGGAGTCGCTTGACAGGACACTGGACACTTTGTCAAAGTTTTCTTCCAGTGGTCAGACAGATATCGTTGCCAGACAACCTCTATCAAGGACAGAATGGGGCAGGGGTGTGACCAGAGTTGTGAAGGAGACAGCTGTGCAGACACTTGATCCTGCCTTTGCCTACCAGTGGAGCAAGGCTGGTGGCATAGCAGCTGTTGGACCTGCCCTTGGAGGTGCTTATGTGGACCCAGCACCCATCGCCAGTCACATTGTCAGCGCAGACGCCATAGAAGCCCTGACAGCCTACAGCCCAGCAGTTCTGGCGTTGAATGACATGCTAAAGCAACAACTGAGCCTGACGCAGCAGTTCATCGAGGCCAGCCATCAACTACATGGTTCTCTCCTGCAGTCCCTGGATGGGGACTCATTTCACTACCATACCTTGGAGGAAGCAAAAGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GAGGCCAGCCATCAACTACA
59.75
TTGTCTCCGTCAGCCAGAAC
59.97
142
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTTCTCTCCTGCAGTCCCTG
59.75
CTTCCTCTCTCTGGTCCCCA
59.96
146
PCR template sequence:
GCAGCAGTTCATCGAGGCCAGCCATCAACTACATGGTTCTCTCCTGCAGTCCCTGGATGGGGACTCATTTCACTACCATACCTTGGAGGAAGCAAAAGAGATTTTAGAATTAATATTTTGTCGATTGATGATCTGGTTCTGGCTGACGGAGACAAATCAGATGGGGACCAGAGAGAGGAAGACTGTGTAAGGGAAGGGAT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-199a-5p(1), mmu-miR-146a-5p(1), mmu-miR-222-3p(1), mmu-miR-185-5p(1), mmu-miR-24-3p(1), mmu-miR-673-5p(1), mmu-miR-484(1)
siRNAs for circular RNA silencing
Junction sequence
GGAAGCAAAAGAGATTTTAGAATTAA
siRNA sets
TTCTAAAATCTCTTTTGCT, AATTCTAAAATCTCTTTTG, ATTCTAAAATCTCTTTTGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIRC1700030K09RIK_791_ORF_1
0.9597
0.185841415
0.927357227
732
ORF sequence:
ATGTGGCCCAAGAATTGTGTGTTTCAGGGCACAGCCACCGTGGTTGGGGATGGAGAGGGTCTTACCACTGAGAGTGACGTCTCAGAGCCCCCGGGGACCAGCTCCTCAGCAGCTGTCCAGTCTCACAGTATGTCCAGGGCCCTCACTGCAAGCCCAGCTTACTCAGAGGATTTTGAGCAGTTCTCTGGTCCCTTGGCCTTGGAGGAGTCGCTTGACAGGACACTGGACACTTTGTCAAAGTTTTCTTCCAGTGGTCAGACAGATATCGTTGCCAGACAACCTCTATCAAGGACAGAATGGGGCAGGGGTGTGACCAGAGTTGTGAAGGAGACAGCTGTGCAGACACTTGATCCTGCCTTTGCCTACCAGTGGAGCAAGGCTGGTGGCATAGCAGCTGTTGGACCTGCCCTTGGAGGTGCTTATGTGGACCCAGCACCCATCGCCAGTCACATTGTCAGCGCAGACGCCATAGAAGCCCTGACAGCCTACAGCCCAGCAGTTCTGGCGTTGAATGACATGCTAAAGCAACAACTGAGCCTGACGCAGCAGTTCATCGAGGCCAGCCATCAACTACATGGTTCTCTCCTGCAGTCCCTGGATGGGGACTCATTTCACTACCATACCTTGGAGGAAGCAAAAGAGATTTTAGAATTAATATTTTGTCGATTGATGATCTGGTTCTGGCTGACGGAGACAAATCAGATGGGGACCAGAGAGAGGAAGACTGTGTAA
Peptide sequence:
MWPKNCVFQGTATVVGDGEGLTTESDVSEPPGTSSSAAVQSHSMSRALTASPAYSEDFEQFSGPLALEESLDRTLDTLSKFSSSGQTDIVARQPLSRTEWGRGVTRVVKETAVQTLDPAFAYQWSKAGGIAAVGPALGGAYVDPAPIASHIVSADAIEALTAYSPAVLALNDMLKQQLSLTQQFIEASHQLHGSLLQSLDGDSFHYHTLEEAKEILELIFCRLMIWFWLTETNQMGTRERKTV
IRESfinder result
IRESfinder score
0.602708535
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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