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mmu_ciRad17_680
Basic information of circular RNA
PanCircBase ID:
mmu_ciRad17_680
mm39_Chr. Position ID:
chr13|100758625|100759305|-
Gene name:
Rad17
Transcript:
ENSMUST00000022136.14
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
15
Exon/intron offsets:
0
Genomic length:
680
Exon/intron sizes in nt:
680
Flanking exon/introns:
chr13:100755659-100759305
Splice length:
680
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAACAGGGTTTCCTTGTCTGCAGAGCACTCAGTACCTATTAGTTACATGTTTTAGTCTATAGTCCTTCCTTCCAGGTTTTTGTCTGTGAATTGTACTGTAAAGAGTAGTTTTGATTCTCCTTTGTTTTAATTTTTGGTTTACATTGATAAAGACTCTCGAGTCTTGCTTCTTCAGTTGTAACTCCTTACACTCATTTATTTTGATTTCAATTTGTTCAAATTTGACTAGTCGATACTGCTTTCAGCTGTGATTTATTTCTTTTTATTATTTTTTATTATGTATATGTTCACATGGTGCAGATGCAAGCAGAGGGCAGAAGGGTACTGGAGCATTTAGCTGGAATGACAGGTGTTTATGAATTGGCTGACGTGGTTGCTGGTGAGCCAATTTGAGTCTAATGCTATAAACGTTCTTAACAGCTGAGCCATCTCTGTGGCAACCCAGTGTCATTTCTAAGCTTTGTCATGAAAGAAACCAGAATGCTTTGTTTGTGTGTAACAAGTTCACAGTAGAACTTTGCATTTCTACCTAGCCCTGCAAAGTTTATGCTAGCCTTCTTCCTTTCCATATCTGGACCTCCTTTTGTTGTGGTTGTTATTGTTTGTGGGGGCTGGAGGTCATACTTGCTGTTTTTCTTTTAAAGTGCTTAGAATCAAATTTAGGGCCTTCCAGCCAAAC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGGGCTGGAGGTCATACTTG
59.82
TCACAGACAAAAACCTGGAAG
56.3
162
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGGGCTGGAGGTCATACTTG
59.82
ACAATTCACAGACAAAAACCTGGA
59.29
167
PCR template sequence:
CCTTTTGTTGTGGTTGTTATTGTTTGTGGGGGCTGGAGGTCATACTTGCTGTTTTTCTTTTAAAGTGCTTAGAATCAAATTTAGGGCCTTCCAGCCAAACGTAACAGGGTTTCCTTGTCTGCAGAGCACTCAGTACCTATTAGTTACATGTTTTAGTCTATAGTCCTTCCTTCCAGGTTTTTGTCTGTGAATTGTACTGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-101b-3p(1), mmu-miR-24-3p(1), mmu-miR-29b-1-5p(1), mmu-miR-382-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-490-3p(1), mmu-miR-544-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CTTCCAGCCAAACGTAACAGGGTTTC
siRNA sets
AAACCCTGTTACGTTTGGC, AACCCTGTTACGTTTGGCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.947006044
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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