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mmu_ciQsox2_2481
Basic information of circular RNA
PanCircBase ID:
mmu_ciQsox2_2481
mm39_Chr. Position ID:
chr2|26101511|26103992|-
Gene name:
Qsox2
Transcript:
ENSMUST00000091263.12
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
8
Exon/intron offsets:
0
Genomic length:
2481
Exon/intron sizes in nt:
2481
Flanking exon/introns:
chr2:26101471-26103992
Splice length:
2481
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGAGGCCTGCATGTTCTTTGCTATTCCCACACTTGAGCACATAGCCTTGAGCCTGGATCTGGAGGGTCTGACCCACTGCAAGGCCCCCAAGGGTGCCCTAGACAGTGTGTTTGAGGACAGTAAGTTCCCTCTTGCTACTGCTTGCCCAGGGTGTCTCAGAGCACTGTGTCCTGTTGGCTTTGGAGCCCCTGGCCCTTGTAGACACAGATGGGGCTCTTTCTTTACCCGAATCTCCCTCCAATGCCACCCCTACAGCTTTACCACAAGTAATTATGAACTCTGGAAGGGGGGGGGGAACCTATAGCAATTTTGCTAAACACTTTTATTATCTTTAAAATCTGTTCTCAGGGACTGGAGATTTAGTTCAATTTGTAAAGTTCTTGCCATGCAGACAAGGATCTGAGGATCTGAGTTTATCTATTAAAAACATAACCTGGGTGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCGACTGCTCTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTAGCTCACAACCATCTGTAATGGGATCTGATACCCTCTTCTGGTGCATCTGAAGACAGCTACAGTGTACTTAGATATAATAATAAATAAATCTTAAAAACAAAACAAACCATAATCTGGGTACAATAACCCAGACCTACATTCTGGTGCTGGGGAGGATCCCTGGATCTTGCTGGCCAATCCAGCACAATCCATTCTGCAAACTCCAGGTTGAAGGACAGAGCCTGTTTCAGACCATGAGAGCATCAGAGAGTAACTGAGGAAGATGCTCTGTGCCCTGACCCTTTCCAGAGTGTGCACACATAGCACAGGCACCCAGACATGTACACACACACACACACATCTCAGATTGCTAAGCAAGCCTCACATGTGATTTTGTTTTAAGAAAACAAAATAGAGGGTCCATGTAGTCTGTCAGGGTTAAGTAATTCCCACTATTCCAAAATCAATGGCAGATTAAAATTAGGCTTAAGAGTAATTCTACTGAGAAATGAATTTAATAGAGATGAATGGAAAATGTCACTAAACTCTTGGTTTTTGTTTAATCTGCTGTATTATAAAGCATATTACAACTAAAGCACTAAAGAAAATTGGTTTTTCTTGGCACCAAGAGCAGACGGTGCCTTTCGTGTGGAGGATTTACTTTGCCTCAAGGCGCTGGTGTAGTGGCCCTTAGATAGGGATTTCTCTCTAATGCCTTCCCTAGCTCCCTCCCACCAGGCGCCTGGCTCTGAGGCAGCCAGAACAAGACACCAGCTGGACCTTGCCCAGTCCAGGGGCCCTGTTGTCCCCCACCACAAGTGCCCACATCATTAGGCCACAGCGGGAAGGGCTGTGTAGCCTGGTGTAATGTTGCTCCTGAGACTCCTCACCTCCTCACCAGGCCCACCAACCAGCCTAGGGGTTGGCTCGCTATCTTTGTCAGACCGTGCTTTGTTTTATGTAGAAGACTCCTGATATGTGTCTCAGAGAGTCCATCCGCATGTACTGGCTGACTCCTTCAGCCAGGGCTGGCTGGCCTTTGCCTTGTCTCCTCACCCTGTGTGTAGTGTAGCACCTATCACACACACACACACACACACACACACACAAATAGACCTGCCTTTATTAACTCTGTACACGCCACACTGTGGAGCAGAGGGGCACAGGGTAATCACAGCAGAGCAGTGTGCACTTCCATCTCTGGGGAGGGATCAAGGGAGCAGTAGGGACACCTTGGGAGAATCATGTTTCCGAATGGAAGCGTGTTTCAGCTGGGAAACACGCAGGAGCAGTGCCTGGTGGCTTCTGGTGTGTGCTTGCCAATACAGATGTGGGGATGACCTGGGAGGTGGCAAGACTCAAGGGGGACCTGTTTCCACTTAGGAGACAGGTTCATATGTATGTACTGCAAAATGTCCTGGTTTGTCTAAACATGAATTCCCCTACTGGAGTCAAGTCCAAGGTCTTTAGGAATCTTCAGGGCCTGGGGGTCAGGGAAAGGTTCTAGAGTGTGGAAAATATGTGAGTAGGTAGTGTTTGGGGCAGAGGAAGGGGGGATGCTTCCACCAGCCAGAGGGCTCAAGGGCTTTGTGAGGTTATGGGTCTCAAGGGCACTTTAAGACAGACACAAGCCAGCCATGGTGGTATAAGCCACAGGCAGATCTCTCTAATTTCAAGTCCAGCCTGGTCTATAGAACAAGTTCCAGGACAACCAGAGCTACACAGAGAAACCCTGTCTCAAACAAAATAGGACACAGAAGTGAGAACTTGATGGACCCATGCAGGAGGGAAGGTCTAGGTGAGTCATAGAGTCTAGTCCCTTGAGAGGCAAGTAGAGCCCAGAATGCAATGTACCTCCTTTGTATGCATGGCTTGCCAGAAAGAAGAGGGCATTTGGATGCCCAGGAGTGGTGGAGGGAGGAAAGCTGGGACAGTTAGTGTGCTAGGTAGGATGAGACATACTAGCATCCTGTGGCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ATTTGGATGCCCAGGAGTGG
60.03
TCAGACCCTCCAGATCCAGG
60.03
160
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATTTGGATGCCCAGGAGTGG
60.03
GGCTCAAGGCTATGTGCTCA
60.11
142
PCR template sequence:
AGAAAGAAGAGGGCATTTGGATGCCCAGGAGTGGTGGAGGGAGGAAAGCTGGGACAGTTAGTGTGCTAGGTAGGATGAGACATACTAGCATCCTGTGGCTGTAAGAGGCCTGCATGTTCTTTGCTATTCCCACACTTGAGCACATAGCCTTGAGCCTGGATCTGGAGGGTCTGACCCACTGCAAGGCCCCCAAGGGTGCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
23
Interacting miRNAs (#binding sites)
mmu-miR-466a-5p(2), mmu-miR-1187(2), mmu-miR-466p-5p(2), mmu-miR-574-5p(2), mmu-miR-9-5p(1), mmu-miR-103-3p(1), mmu-miR-221-3p(1), mmu-miR-125b-5p(1), mmu-miR-138-5p(1), mmu-miR-351-5p(1), mmu-miR-125a-5p(1), mmu-miR-501-3p(1), mmu-miR-107-3p(1), mmu-miR-705(1), mmu-miR-690(1), mmu-miR-369-3p(1), mmu-miR-484(1), mmu-miR-3065-5p(1), mmu-miR-350-3p(1), mmu-miR-670-5p(1), mmu-miR-490-3p(1), mmu-miR-323-3p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GCATCCTGTGGCTGTAAGAGGCCTGC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.706673524
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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