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mmu_ciQk_685
Basic information of circular RNA
PanCircBase ID:
mmu_ciQk_685
mm39_Chr. Position ID:
chr17|10434403|10435088|-
Gene name:
Qk
Transcript:
ENSMUST00000233645.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
6
Exon/intron offsets:
0
Genomic length:
685
Exon/intron sizes in nt:
685
Flanking exon/introns:
chr17:10432362-10435088
Splice length:
685
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTATGATTCCTGTACTATGTGATTAATGCATTCCTAAATTTTGGTACTCCAGACTTTGGAAGGATAGTTATCGATTTCAGAGCGACAGTATAAGTTTTGATTAGCAAAAGTTGAAAACTAAATATGGTTTTATTTGAGTTCCTCACTAAAGTTCTCCCATTAAGTAATTACACCTTAATTTGGGTCACTTTAGTATCTCAGAATCATTCTGGGTAAACTTGCCACGTATAGTCTCAGTGAGATTTCTTAGGTGACTAAACTTGTTCTTGAGTTTTATTTAAACCATTCTTTCCCCTTTATCCTAATAGGCAGAGCTTCACTACCCAAAATTAGGTTTATTTTGTATCAGAGATTGCTTGGTGAATTTTAAATTTCTATCAATATAGTGAGATTTTTATTAAAATTCTGTTATTTGTGTATGTGTTTAAGTATTTATGATCACTTAAAAGATGTAGTTAATAGTTTCAGTTTTAAGGGTTTTCAGCTTATATCTTTTAAAGTCCTGAATAACATGAACAATATTTTATAATTTCCATACTACTGTGGACTAGATGACCACATACCAATTTAGTAAGTTTAATCATGTTGGAGGCAGAAATTGAAGTCATATAACTTCATGCGTTTACATGATGAAAAAGCAATATTCTTGAAAAAGACATTACTGATGCCTTTTTTTTATAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCGTTTACATGATGAAAAAGCA
58.14
ACTGTCGCTCTGAAATCGAT
57.05
157
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCGTTTACATGATGAAAAAGCAA
58.72
ACTGTCGCTCTGAAATCGAT
57.05
157
PCR template sequence:
CATGTTGGAGGCAGAAATTGAAGTCATATAACTTCATGCGTTTACATGATGAAAAAGCAATATTCTTGAAAAAGACATTACTGATGCCTTTTTTTTATAGGTAAGTATGATTCCTGTACTATGTGATTAATGCATTCCTAAATTTTGGTACTCCAGACTTTGGAAGGATAGTTATCGATTTCAGAGCGACAGTATAAGTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-216a-5p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-335-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTTTTTTTTATAGGTAAGTATGATTC
siRNA sets
AATCATACTTACCTATAAA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.946486442
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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