top of page
mmu_ciPuf60_85
Basic information of circular RNA
PanCircBase ID:
mmu_ciPuf60_85
mm39_Chr. Position ID:
chr15|75947500|75947585|-
Gene name:
Puf60
Transcript:
ENSMUST00000100527.13
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
85
Exon/intron sizes in nt:
85
Flanking exon/introns:
chr15:75947480-75947585
Splice length:
85
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGAGTGCATCTCCTGGGCACAGCTACTTAACCAGGGTTGGAAAGGCAGGCCATCCCCCTGCAGGCTGGGCCCCCCAGTGCTC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAAGGCAGGCCATCCCCC
62.08
GTAGCTGTGCCCAGGAGATG
60.18
71
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAAGGCAGGCCATCCCCC
62.08
AGTAGCTGTGCCCAGGAGAT
60.33
72
PCR template sequence:
AAAGGCAGGCCATCCCCCTGCAGGCTGGGCCCCCCAGTGCTCGTGAGAGTGCATCTCCTGGGCACAGCTACTTAACCAGGGTTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
CCCCCCAGTGCTCGTGAGAGTGCATC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.517679676
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page