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mmu_ciPsma3_4502
Basic information of circular RNA
PanCircBase ID:
mmu_ciPsma3_4502
mm39_Chr. Position ID:
chr12|71025589|71030091|+
Gene name:
Psma3
Transcript:
ENSMUST00000160027.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
4502
Exon/intron sizes in nt:
4502
Flanking exon/introns:
chr12:71025589-71030092
Splice length:
4502
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGAAGCCCTGTTTGATTTGAAGTGAGTGTTTTAATCTCTTCCTTTGTATGTTTGGTAATTAGGCTTTGTTGTGTTGCTTTAGCATAAACAAGTGTCATACCTTGAGTAATCTCAACCTCCTCCCTCGTGGCCCTCCTCAGAGCTCTTGAGTAGATCTCCCATCTACATTTGTGTTCCAGGGCTCAAACAGGTAATCAGACTTGCAGTATATACTTTCACCCAGTGAGCCATCCTGGTAGATTATTTTATTTAAAAAAAAAAAAAAAACAGTTTTGGTGGTGATAGCTCACACCTTTAATCCCAGCAATTGGTAGGCAGAGGCAGGTGGATTTCTGACTTTCAAGTCAGCTTGGTCTACTGAAAGGGCTACACAAAGAAACCCTGTCTCAAAACAAAACAAACAAAACAAAACAAAAAACAGCCATGGGTGGTCTGGAACTTGACGTGTAGGACAGAGTGGCCTAAGGAGATTCTTCTGTCTAGGGCTGGGATTAAAGATGCATTTTTCCCCTGTGTAAATCAATCCTGGAACTGGAGAGATGGCTCAGAGGTTAAGAGTGCTTGCTGCACAGTCATGAGGACTAATGTGTAGAGATCCTAGTACCACTATCAAACTGAGCTCCCAGCGGTTGCCTATAATTCTAAATGTGAGAGTTCCAGTTTCCTCTTCTGCTCTCTGTGCATTACCCACCCACACATATGCACATACACTAACACAGGTCCACACACTTAAATACAAACCTTTTGCCAGGTGGTGGTGCACACCTTTGGTCCAGCACTTGGGAGGCAGAGTTGGTGGATTTCTGAGTTCATGGCCAGCCTGGTCTACAGAGTGGGTTCCATGTTAGCCAGGGTTACACAAAGAAATCCTGTCTCAAAAAAAAAAAAAAAAACAAAAATCTTTTAAATAAGTGGGGAAAAGAAATGTTGAGACTGTAAGCTCAGTTGGTGTAGTACACACAGAGTTCTGGGTTTGACCTCCAGTGCCCCATGAGCTGGATATGGTGGTTAAACAGCTAGGAAATACTTCAGCTATAATTTTAAGATTGTGTTCATATCGAAAGGTGATTCATTTTTTTTCTTGTGGTGGGTGCACGTCAGGAAAGCGCTTTGCTGCGACAAGTACCTGTTAAGTTTAAGAAATACCAAAATAAGTAATTAGTAATATTCAGGTAGGTGCCTAAAAGCACTATACTTGAACTACACATTGCTGCGATTCTGTTTTCTGAAAGGATTCTCTTAGGGGTGGAGAGATGGCTCAGCAGTTAAGACTGTAAGACTGTATTGTTTTTGCAGAGAGCCTGAGATTGGTTCCCAGACCGATGTGGCAGCTCAGGGGAGTCTGACATGCAGTCTTACACATCCCCTTAGGTTGTTAGGCCTAAGATTGATTTACTTTCTGTGTGTGTGCATGTGTGAGCAGAGATCAGAGGACAATTTGTGAATTGCTTTTTTTCTGTTACGGGATCAAAGATCGGTTTTCATGGCTATCCACTCAATCATCTTACCAGCCCCACAGACTTTCATACCTTTATTTTATTTTGCATACTCAGTATATTTCTCAGACTGACATAGGACTTCCTGTGTAGCCTAGGCTTTAAAACTTGTAGTCCGCCCGGCTTCAACCTTCTGAATTCTGGGATTTAAAATTTATTGGGGAATCTCAAAAAACATTTATTAGTGCAGGATATAGGTTTTACCATTACTTAACATATTAGAAATAAAAGCTGAAAATTAAATATTAGTTGATTATAGAGAGGTTTACATTGCTTCTGTTAAGATAATAGTCCTGCCTTCCCTGAAATATTTTTTTCTTAAAAATTTTTTAAAAGGTTTATTTTTATGTATATGAGTACACTGTCGCTGTCTTCAGACACATGCCAGAAGAGGGCATCTGATCCCATTACAGATGGTTGTGAACCACCATGTGGGTGTTGTGAATTGAACTCTGGACCTCAGGAAGAGCAGTCAGTGCTCTTACCCGCTGAGCCATCTCCCCAGCCCCCCTGTGTGTTTTTGAGGGATGTCCTAACCAGACACTGAGGCAGACACCCGAGCTTGACTCTGGCTGGACTACCTGCAAATGATGGGCATGTAATTGTTTTGCTTCAGGTTCTTCATTTGTAAAATAGATGTGAGAATATTGTTTTCCAAAGTTATTATATAAATTAGCAGTGTAATGTAGTTCACTTGTACAGTACTGGGTAGCAGTACTGCCTGGCGTGTGTGGGTCTTATGTTCCGTCCTCAGCACCACACAAAGAAAAAGGAAAGTTTTCCTCAAAAAAGAACAAGCTGATAGGAGAATTTATTGGTCTTAAGAACAAATACCTAATGATAAAACTGCTCACCTACTTACTATTTAATATTATTCCTAATAAACATTACTAATGATATTTATTAAAGTGGCTTATAGTTGTAAATAGTTACCTCCCTTTGTATATAAGTTTTACATATTCGGGTTCAGCCAGCTAGAGTTAAAAAATACTCAGAAAAGCCAGCCATGGTGGCTGAATCTTTAATTCCAGCAGTCAGGAGGCAGAGGCAGCAGAATCTCTATGAGTTCTAGCCCAGCCCAGTTCACAAAGTCAGTTTTAGTAGCACAGTCAGGGCTACACAGAGAAACCATGCCTCGAAAAAACCAACAAAAGAAAGCCAAGAAGTTAGAAAGGGATCAGAGTGTAGCTGATTGGTGATGTGCTTGCCCAGCATGCACAAGGCCCTGGGTTTGATCCCAGCACCACACAGAGACACAACAAAGACAAGCAGGGCAAGTCCCTGTAGGGCTGGAGATGTACCTTAGTGCTGCGTGCTGACTAGGCAGGAGGCAGAGTGCAGTTCCAGCATGCAAAGAAAAATGGTAAGTTTTGTAAAATTGAAAATAGTTGCATATTAACGTTAATAAACAAGTTAATGAAATGAAAATCAGAAAGAAGACCAGGGATGTAGCTGAGTTTAGAGCAGCTGCCTAGCATATGCAAAGCCTGGTTTGATTTCTAGTGCCCCTCTACACCAGCAAAAAATTGGAAAATAAAGTAAGAAACATATTTTAATCTGAAAATAACATTATTTTCCATTATTCCATATTATTATCCATATTTTACTTGAGATTAGGAGCAGAGTTGTAACAGAACATAGATTTTATTGATTTGTATATTTACTAGTAGTATATATTTATTGCAGAAGAAATAGATGAACAAAATAAAGAAAAATACTTAGATTAGTTTTATTGTATGTAGCTGTATCTTTTCTTATGTATGTTATGTACCCTTTTGTTCGTTTGTTTTTGGTTTCTGAGACAAGGTTTCTCTATGTAACAGCCCTGGCTGTCCTGGAACTCAAAGTTCCAGGTTGGCCTTAAATCCATCCTCCTGCTTCTGCCTTCAGAGTACTGGCGAGCACCACAGCTGGGACAGGGTCTGCTGGGCCTGGAGTGGCAGGCACCTTTGATCCCAGCACTTGAGAGAGGCAGAGACAGGTTGTTGTGAGTTCTAGGCCAGCCAAGGGCTACATAGCAAGACTGTCTCTTTGTTGCTATTGTTTGAGACAGGGTGCCACTACACCTGGCCTCTAGTTTTTCTCTATTTTTTTGTTTTTGTTTTTGTTTTTTTCTTTCAAGACAGGGTTTCTCTGTATCGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCACCTGCCTCTGCCTCCCAAGTTCTGGGGTTAAAGGCGTGCGCCACCACTGCCTGGCTTGGCCTCTATTTTTAAGTATTTTAAAGTGGGCCAATAAGCTGACTCCTTCTTTGGGGCACCTGCCACATCCTGGTGGCCTGAATTTGATCCGAGACCCACATGGTGAAAGGAGGGGCGTAAGTCCTTCTGTCTGTCCTCTGTTCTCTGCACACATGACTCTGAGAGCACACATATGCAGGTACACGCAGAATATAGGTAAGTCCAATAAAGTGCTGCTGAGTTTAACAATAAAAACACATGTTTAAATATATTTTACATGGTTTAAATACTGTATTTTATTTATTGTTAAGGTCCCCTGTATCTTAGGTTGTCCTTCAACTCACTATGTTGCAGAGGATCACCTTGAACTTCTAATCCCTTTGCCTCTAGTGCTGGGATTGTAGGTGTGTACCACTATGCCTAGTCTTTGTGTAGTGCTGGGCAAACGCTACCAATTAAGCTGTCATCTCCAGTTATAAATTAGCCTTGGGATAAAGTCTCCTTCATATAGCCCAGGTTGCCTTCAGCTTCCCAGGCACTCCTTAGGACTTTGGGCGGTTGATGCTCTTACCTCCATCTCCCAGGCGCTAGGATTAAAAGTGTGCTCACAGCTTTTTGTATTTGTTATAGTGCTGGGGAATGAATCTAACACTTTTTTAACCTGGGCCATCACTCTATTATCTGAACTGTAGTCAACCCTTTGAATTTTTTTTTTAATCTTACTAAGTTTCTTCTATTTCAGCTAAAAAAAAATTTCTTCTTGTTTCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCTGAACTGTAGTCAACCCTTTGA
59.59
GCTAAAGCAACACAACAAAGCC
59.46
174
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCTGAACTGTAGTCAACCCT
55.41
GCTAAAGCAACACAACAAAGCC
59.46
174
PCR template sequence:
ATCACTCTATTATCTGAACTGTAGTCAACCCTTTGAATTTTTTTTTTAATCTTACTAAGTTTCTTCTATTTCAGCTAAAAAAAAATTTCTTCTTGTTTCAGTAAGAAGCCCTGTTTGATTTGAAGTGAGTGTTTTAATCTCTTCCTTTGTATGTTTGGTAATTAGGCTTTGTTGTGTTGCTTTAGCATAAACAAGTGTCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
51
Interacting miRNAs (#binding sites)
mmu-miR-221-3p(2), mmu-miR-15b-5p(2), mmu-miR-709(2), mmu-miR-339-5p(2), mmu-miR-351-5p(2), mmu-miR-1187(2), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-7b-5p(1), mmu-miR-103-3p(1), mmu-miR-150-5p(1), mmu-miR-223-3p(1), mmu-miR-26a-5p(1), mmu-miR-211-5p(1), mmu-miR-204-5p(1), mmu-miR-322-5p(1), mmu-miR-335-5p(1), mmu-miR-18a-5p(1), mmu-miR-298-5p(1), mmu-miR-216a-5p(1), mmu-miR-222-3p(1), mmu-miR-184-3p(1), mmu-miR-326-3p(1), mmu-miR-143-3p(1), mmu-miR-25-3p(1), mmu-miR-138-5p(1), mmu-miR-139-5p(1), mmu-miR-26b-5p(1), mmu-miR-494-3p(1), mmu-miR-511-3p(1), mmu-miR-541-5p(1), mmu-miR-340-5p(1), mmu-miR-297a-5p(1), mmu-miR-107-3p(1), mmu-miR-466d-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-342-3p(1), mmu-miR-466a-5p(1), mmu-miR-466p-5p(1), mmu-miR-129-5p(1), mmu-miR-5101(1), mmu-miR-539-5p(1), mmu-miR-669d-5p(1), mmu-miR-452-3p(1), mmu-miR-3065-5p(1), mmu-miR-3470b(1), mmu-miR-466b-3p(1), mmu-miR-1904(1), mmu-miR-574-5p(1), mmu-miR-323-3p(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TCTTCTTGTTTCAGTAAGAAGCCCTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.848272757
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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