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mmu_ciPrpf4b_486
Basic information of circular RNA
PanCircBase ID:
mmu_ciPrpf4b_486
mm39_Chr. Position ID:
chr13|35086658|35087144|+
Gene name:
Prpf4b
Transcript:
ENSMUST00000220965.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
14
Exon/intron offsets:
0
Genomic length:
486
Exon/intron sizes in nt:
486
Flanking exon/introns:
chr13:35086658-35087169
Splice length:
486
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAATTGCTTCTTTACCTTTTATTTCTTTTGTAAATGAAGCTTTTCTTTTAAAATGTGACTTTAAAGTGTTGTCTATTGCATAAACAGTTGACACTCACTTACTGTAATGAGAAGATTGTTCTGCATGGGAAGTGGGCCGTGCAGATCTCTGTATGTTCTCAGTATGCATCACTAGATAATAAAGTCTTTTGTGAACAAGGCATTTGTAGCCATTTTTAAAAGATTTTGTCTTCAGTGCTGGTAAGTCAGGTAAACTGTAAATAGTTAAAGCAGTCTTTGTTTTTCTCCTGAAAGGATTACCTGCTAAAGATGTAACTCAGTATAGCCTTATTTCTAAATTGTTTTTAATAATTAAGGTCTTAATTATTTCATCCAGAAAAAGTTCTTCAAATTTTGTCAGCTTTCAGTGTAGTGAGGTTATTCCTCAGTGTAGTAGGTTATGGGGTCTAACTCAGGATTTAACTAATGTTTCTGCTATTTTCTCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AGGTTATGGGGTCTAACTCAGGA
59.99
AGTGAGTGTCAACTGTTTATGCA
58.55
151
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AGGTTATGGGGTCTAACTCAGGA
59.99
GTGAGTGTCAACTGTTTATGCA
57.19
150
PCR template sequence:
TTCAAATTTTGTCAGCTTTCAGTGTAGTGAGGTTATTCCTCAGTGTAGTAGGTTATGGGGTCTAACTCAGGATTTAACTAATGTTTCTGCTATTTTCTCAGTAATTGCTTCTTTACCTTTTATTTCTTTTGTAAATGAAGCTTTTCTTTTAAAATGTGACTTTAAAGTGTTGTCTATTGCATAAACAGTTGACACTCACT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-203-3p(1), mmu-miR-690(1), mmu-miR-532-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TGCTATTTTCTCAGTAATTGCTTCTT
siRNA sets
AATTACTGAGAAAATAGCA, AAGAAGCAATTACTGAGAA, CAATTACTGAGAAAATAGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.957902446
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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