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mmu_ciProx1_6997

Basic information of circular RNA
PanCircBase ID:

mmu_ciProx1_6997

mm39_Chr. Position ID:

chr1|189885721|189892718|-

Gene name:

Prox1

Transcript:

ENSMUST00000175916.8

CircRNA type:

Circular intronic (ci)RNA

Exon/Intron count:

1

Exon/intron indexes:

2

Exon/intron offsets:

0

Genomic length:

6997

Exon/intron sizes in nt:

6997

Flanking exon/introns:

chr1:189885720-189892718

Splice length:

6997

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

ATATCCTTTTATCTTTCCCCTCCAGAACAAGCATAAACAAAAGCCCAGAGGAGGTCTGTGCAGAGCTTAGGTTCCCACAATGTATAGGAGGGTATATGTCAGTATGTTTTCTATGTGTTCTGGGAGGTTTAGTTTTGTTTGGGTTTGGGGACTTTGAGAAGCTTCACTATGTAGCCCAGGCTGGCCTAGGTCTCCCAAGATACTCAGATGACAGGCATGGACCACAGTGCACAACTTCCTTAAGAATGCTGTCTTTCCTATTAGTTACCATGACAGGCTTGTGACAGGCTCGTGCTGGGTGTTTCTGAGTGCAGAGAAACTTAAAAACCGATCCCAACATCTCTAAAACTTAGGCAAGTGCTTAATTGCCTCTAGTAACTGTTTCCAAGGTGATTTCCCAACAGTGCTTTTTTTTTTCTTCTGCCTTTCTTCCTGTGTGACTTTCCTGTCTCCTTTCTTCAGAGCAGAGGTGGGGTAGGGGGTGGAGGTGGGGAGATACCTTGTAAATACTGAGTTTTTATAAAGATGGTAAGTTTCGTGACAGAAGTAAGGAGAAAAGCCAGTTTTCAGACCCGTGACTCCATTAAGAATTCTCACTGCCAGCTGCCTTTGAGGCTACTGTGGGCTAGAGAGGCCTGTCTACATCTCACAAAAAGATGCTGTGGTGTGGGACAGATAGCGATGGGTGTGGGGAGTGCTTGCCTTCTCTCTTTAATCTCAAGTGAGACTGTTTTTAAAGGAAATGGGCAGGTATTTATTTATTCCTATGGTCGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACCAAGGCTCGTTCATGGGTCCAGGGCAGCTGCCTGTACGCATGAGTGACCCCTGCTCAGCCAAACACAGAAATCTTTTGTCCTAACATACACAAAGCAAATTATTTTTGAAAACGAGAGAACACAGTTAAATCCCAAACTCAGCTGTATAAAAACGGCCCCTTTAATGACTCTTCCCGTCCTGAACCTGACTTAGGTAGAGACGCCACTCACGTTTTCAGCAGATCTGTTCCGTATTCGTGTGATTTTTTTTAATCCATAACTTTTTTCTTCTATAAATCAAGCCTTTCAATATTTTTTAAAAAAATTCTTGTGGTTGTTTGTCTTTGGGGTACGGGGAGAATGGTAGCATTTGGGGGCAGGTGGAGGCATGCCTCTTGTATAATAAATTACCAGATGGATATAAAATTTAGCAATTAAGTTGGCTGTTACTAAATTGAGAATTTTGAGCAATCGTCTTGATGACTAGAAATTGACATTTTAGTAGCTAAGCCCACTCCAGAGGCTGCATGGATGTTCCAAGTCCACAGGATGGTTGAAATATCGTATCTCACTCCTTCAGGGCAGTGTGATAACATGAGCTGAAGCCAGGAGCATGAGGACTTCCTGCACCACTCAGCCCAGCATCTCTCTTCCCACTCCAGGGAAGATAGGAACATCTTGGGCAAAGACAAAGCCACTGAGGTCTCAGATCTGAGTCTGAGCTTGTTTGCTGGTTCAAGACCCTAATATTGAATGCACCCAAAGCTAAGCCTCACAGTTGTGTTCTGTATTCCCAGCTAGCAACAAGACCAAAACAGATCTGCTCGGCAGGAGAAAAAGAAAGGAAGACGACAGGATGGATAGCTTGAGTGGTTGTCAACCTTCCCTCAAGGACCTTCCTGTTAGGCTAATGTCTAAGCTTAGACCCCTTGCACCTCAGAGCACTGCATTTTAAAACAAACAGTAAAGTAGCACTCTCTCTGTCTTCTCTCTCCTATCTCTCTGTCTTTATCTCTCTGTCTTTCGGTCTCCCATCTCTGTCTCTCTCTGCCTCTGTCCTCTGTCTCTCCCCACCACCTCTCTCTCCCTCTTTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACAGTTACACATGCTCATTTTGGTGACTAGTTAATCTAGGCTTTGAAATACTGAACATACACAGAAATGTCTCGATAATAATGCCAGCTTTCTAAGTTTTGGACTTCTTATCATGATTGGACAATTATGATCACACCCTTTTTTTGTTAGCTTGATTTTATAGGGAAAGAAAAGTCTTTTGGTTCGCCTTAAGTGTCCTGTAAGCTCACTGCACCCTTTCTATCTAAATCCCCTGAGGAATTTTGAGGATTGGAAGGGAAAGGAGTCCCTTCCCTTCCCATACACCCATGGCTATAAAGAAAATGTGGAAGCATCGTCAGGGAGTGAGTGTTCTGCCTCCTCTGAGCTGTCATGGCAGGAGGCAACCCTGTTCACCTGAAATACAGGTTGCTCCCCTCTGGGGTTGCTTCCTTCCTTCAGGCTCCACAGCCTCCAGCGTCTTGTTAACAGTTAGTAATTTTCCCCCACATTTTGGGCTCTAACCTCCAGCTCCCTGCTCTTCTCTATCCATTGGACCTGTGAATGGTCAGCTCCTTAAAAGATCAGATTTTGGGGAAAGGACAGGCAAGCCACAACAGGAAACCAGCCTCCCTTTGCACCTGCTTCCTCGCTCAGGGCAGCGACGTCCACGACTCACCTGGCTCAGACACCTGCTGCTCTACAAAACCATTTTGTGTAGTCAGTTTTAGACCAAAAACAACAAACCAAACAAACAAACAAAACTACAACAACTACGAAAAGACAAAACAAAACAAACCCCAAATCTCCGTCTTCGCTTGGTAAAATCTCGAGGAGCATTTTTACTTCAGTTTTTGTTCTACAAGGCCCTGCGGGGAACAATGTTAATGGAGAGGAATAGCCACATCCTGGGATGGTACGTGGGGACTACCTTCACTGTGCTTTTACAGTTCTTTAAATGGTCATGACTAACTTTTTATTTTTAAAACTCTGGCACACTAGAGTGAACCCAGGGTCTTCTGCATGCTAGGTGAACAACTTGCCCACTGAACAATCATTCCAAGACAACATCACTTCCCTCTTCAAGAACATTTCTTTCTTTCTTCAAAGGGCATTCTTTTTTTCTCAATGAAATCACTACGATAAAGAATAGTGGTGAATACCTGTTTCTCAATTGACTACGGGTTCTGCTGAGCACATGAGTCACTTATATTTGAAATACTAGGCTCACAGCCTTGTGGTCATTCTAGAAAGGAGTCCATGTGCTCATGTTTAGTGGAACTTCAGTGCACCTGCTCAAAGAGCTCATGTCTTGGGTATAAAACACTGTGCCCAGTATCTTTGCAAATGAATCCGTTTAATCAAATATTAAGTTTTATTCAAATCCCCAGATTATCAGTTAGCCAATTGTCTTTCTTCAGGATGTTTCTTGTCCCTCATCTTCTTTGCATCTCAAGAAAAAATAGCCTTGTGTCTGCCTTCCGCATTTGCATCCACCCAGCTCAAGCACAAAGTTGTCAGATGAGCCATTAGGAGATGCTTGGCCGGAGGTCCTCAGCCTCTTCTCTGGGATTGGCATTTGCAAAGAAGGTCATGTGATTATTTTTGGGGGCTGAGAAAGAAAAAACTGTGTCATGGCATAGATTGATATTGAATTATAAAACACCGGTTGAAAATGATGATTGTTTTTGGTTGTTCTTTTTGGTTTGTTGAGACAAGGTCTCACTATGTAGCCTAGGCTGACCTAGACTACAATTCTCCTACCTCAGCAACCCTCACTCTGGGATTACAGGTGTGCAGTGTGACCTTTGACATTTTGACAAGTCTTAGAGAGCCAAGGAATCTAACCCATAGATGAAATCCTGAATGGCTGTAAGCACCTAACCATCTAAAGAAAAAAAGAGGAAAAGAAAGTCATTAAAACAAATAAAACTGTACACAGCTCTTTGATGATGTCAGACTCCTAAGAGTGATGTCCGGCTCTATTCTGTCACTAAATGAGAGCTTAGGTCTTTTCCATCCATTTGATTTTCTTGAGAAAGTCTCAGAGAAGGGAAAAAAATCTGTTTTGAAGTGCTTAGAAAATGGGATAACCCTCTTCCCTATGTGGAACTGCAGCTTGAAACACAGAGTTCAACTAGGAAACATTTTTTTTTCTTCCTGAAGCCTTCAGGGCCTATTCTTGCATGGGCCTTTTTGCTGCCCGGGCTGTTCTCCTGCGGCTGCTCTTTAGGTAAGGTTATATTGTGCTTGGTAAACAAACCACATTGAGGCTCTCAGGTTGTTTGAACTCTTGGGTTCAGCTGTATCCCTCTCCATCCCTGATATCCTTTCTATCTCTGAGCAGATGTCTTTCATTAATTTATGGATTTATCATCTTTTCTTTTTTCCCCCTCTCTCTCCTCTCTCTCTCTCTCTTTTTTACACCTGGCAGCCGTCTCAAGTTTCTGCAGTTATTGTCTATTTTGCATTACACATAGAATTGAATGTCATCTGTCTTCACAAAGCTGAGCCGCGTGAGCTGCCGGGACAGCGCTTGTTTGCAGCCCCCTCCCCTCCCCCACCCCTTCACCTCCTTAATATTTATTTGTGCTCATTTTCTTTCCTGGCCTTGAATGGAGCTTAGCCCGTGTTCAGTACAGCTGTATGTTTACTGAATCTATTCCATCGTGAGTCATTGTGCGTGTGTAAGTATCCAGGAAACAGCTAGTGCCTTCTTGGAAGAGCAGTTGCTTTCAGCACAAGCACTTAAAAGGGAAATTAACCAATTGGTCAGTTCGGATTGATTTTGAGGAGGAAAAAAAGGGGGATTATCTAACTGCTGGCTTTTAAATGTTTCATTAGCTATTTTTAATAGTTTATTAGAAACATATATTTTATGAGAATTTTATCTTAATTACACAGGATCGAGAGTGACAGAGACAGGCTGTGTTCTCTTTGGACAGATCTTTCCAGGTATTACCAACCGGAAAGATCTTGAAGCAAAAAAAAAAAACTTGAGCAATCCAAATCATTAAATAAAAAGCCTCTAAATTCTGATAAAAAGAAAATGTTTTTTTTTTTAAATACAAAGAACTGAAATATCTTAACAAAATTTAGATGCACAGAAAGTCCCAGGGTATTTGGGCAGCCCCGTGCCTCTTTGAGACACAGGACAAAACAGTTTGTCTTTTGTATGGGACCAAATCTTCAAGATTTGGAACTTAGAATCATAGGCAGGGCTCTCTGAAAGGAAAGATTAGAACCCCTATGGAAGATATTCATCTAAGTTTGGGCTCCCTTAAAACTCTTATCATGAGGCTGGAGACAGCTTGCAGCCATGATTTCACTTACCCATTTGGACAGATGGCCCTGAAGTGTGCCGGCTCCTTTAGTTGTCTCCATCAGTCTAATGGAGGTTACTAGAGGGCCTTTCAGCTTTTCCTTGGCACAACAAGTATGTCAGTCATAAATTATCGTCTTTGTAATCATTAAGGACCTTAAACAAAAACACAAGTTCAGTTAAGCTGCTTTGGCTTGCATACAGAAAAATCAAAATTTATTTCTTCAGTGTTTATTCTCAGTTACACACACACACAAACACACACAAACACACATACACATGTTAACTTTGCCATTTAAAAACAAAGGGAGATCTTTAAAAAAAAAAAACCAGCATAGAATATAAAAGAGGGTGTTTGTCTTTGAAACACATTCACGGCAGAGTGTTTGGTCAGGAGTAGTCAAGAAGAGCTTATCGATATTAATTTGATTGGGTACATCTTTCTGGTCCCCACTATTCTTACGAATCTACAGTGCCATTCCTAATGGGAGGTACCAGGCACCGGTTCTCTTTTCCAAATATCTATGTTTCTCGTTTCTCGTTTCTCGTTTCTCGTTTCTCGTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTTTTCCACCCTTATTTTTTTCCCACTCTCCTCTAAGAGATAATAGTCCTTAGAGGAGCCTCCAGGAAGGACCCTTAATTGACCTTGTGGGGACCACATTGATTTTCTCCACGTGCATCTTCATCTCTGATAAATTATAAAGCCATTAATTTGCTGAGGAAATGGCAGGGCCAGGCTGCGGCACAGATGTGACCAGAGCCATCCCAGCTCGGAGCCTGCTGAGGAGTGCCAAGAATCTGAGAGAGATTCGGGCAGCCTGGATTGTTATGGTTAGCCTGCCGTTCTCCTGGGAACTGTTTTCGTTGCCACTGTTTACAGATCTAAAAGGTGATGATGTTTCTAGATAAATAGCTCTTCTTATTTGGGGTAAGTGGCTACTTATTGATCTACTAACCCACATGTATTGATTTGTTAGCCCCCAACTTTTTATGTCATTCTCAAAGGAGTTAACTATAAATCCAGGACGGGCAAATTGTATTTGGTGTTGGACCGTTGCTTTAACAAAAGCGACAACCCCACTCCTGCTCTCTCCTGCCAGGATACCCCTCCCAAGTTGGAGCTGTTATTTTTAAAGGAAACAGATCAAAGACAATCTAGACAAGACTGGAGAAACGGAGTCTTGAAGTTTCACTGTGTTAGCCCTAGAAGGTGAAACGCAAAGCTTTCGTAGTCATGTTTAAAATAACGTGTTGTGTAGCTAGCTTTACCCAGGCCAGCTTGATGATCTGATGCAAACTGCAGAGTGTTGAGAAAAGGGCAGAGAGAAGACAGCTGTAGAGAAGGAAGGGAGATCCTAGACTAATGCCCTGTAGTCGGCTTTAGGCTGACTGTCTCCTTAGCAACAAGTGTATGGATAGCATACTGGACTTTAAGTAGGAAGGAGGGCTTGGACATTCCCACCAGGCAGAAGCCAAGAATCTGTGGTTGAATTGTGCATCCTAACCCTTCCCTTTGGCAACCTGAGACAGGCAGCGGATATTCTGAGCACAAGGTGATGGGTTAGTGATGGATTCTGGAAGCCATATGGATGACTACCCAGCCTTCCCAGGGCTGCTTATGGGGACTGGACACATTGTCAGTGTGTGTGGAGATGGGGACGGGAGGGCCACACTCTTTTGTTTAACCTTGTTTGTGCCTTAACCGGTTGCATCCCA

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

TGGGGACTGGACACATTGTC

59.6

GACCTCCTCTGGGCTTTTGT

59.6

153

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

GTGTGTGTGGAGATGGGGAC

60.32

ACCTAAGCTCTGCACAGACC

59.39

148

PCR template sequence:

TTATGGGGACTGGACACATTGTCAGTGTGTGTGGAGATGGGGACGGGAGGGCCACACTCTTTTGTTTAACCTTGTTTGTGCCTTAACCGGTTGCATCCCAATATCCTTTTATCTTTCCCCTCCAGAACAAGCATAAACAAAAGCCCAGAGGAGGTCTGTGCAGAGCTTAGGTTCCCACAATGTATAGGAGGGTATATGTC

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

57

Interacting miRNAs (#binding sites)

mmu-miR-185-5p(4), mmu-miR-1187(3), mmu-miR-5101(3), mmu-miR-135a-5p(2), mmu-miR-211-5p(2), mmu-miR-181b-5p(2), mmu-miR-381-3p(2), mmu-miR-128-3p(2), mmu-miR-30b-5p(2), mmu-miR-136-5p(2), mmu-miR-494-3p(2), mmu-miR-382-5p(2), mmu-miR-300-3p(2), mmu-miR-574-5p(2), mmu-let-7a-5p(1), mmu-miR-181a-5p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-miR-30e-5p(1), mmu-let-7c-5p(1), mmu-miR-204-5p(1), mmu-miR-33-5p(1), mmu-miR-30a-5p(1), mmu-miR-328-3p(1), mmu-miR-298-5p(1), mmu-miR-196a-5p(1), mmu-miR-709(1), mmu-miR-143-3p(1), mmu-miR-30d-5p(1), mmu-miR-214-3p(1), mmu-let-7d-5p(1), mmu-miR-434-3p(1), mmu-miR-29b-1-5p(1), mmu-miR-676-3p(1), mmu-miR-22-3p(1), mmu-miR-212-3p(1), mmu-miR-194-5p(1), mmu-miR-218-5p(1), mmu-miR-511-3p(1), mmu-miR-183-5p(1), mmu-miR-297a-5p(1), mmu-miR-98-5p(1), mmu-miR-27a-5p(1), mmu-miR-499-5p(1), mmu-miR-680(1), mmu-miR-690(1), mmu-miR-29b-2-5p(1), mmu-miR-466a-5p(1), mmu-miR-466p-5p(1), mmu-miR-344d-3p(1), mmu-miR-452-3p(1), mmu-miR-188-3p(1), mmu-miR-3470b(1), mmu-miR-490-3p(1), mmu-miR-544-5p(1), mmu-miR-181d-5p(1), mmu-miR-7a-1-3p(1)

siRNAs for circular RNA silencing
Junction sequence

CGGTTGCATCCCAATATCCTTTTATC

siRNA sets

TAAAAGGATATTGGGATGC, AAAAGGATATTGGGATGCA, ATAAAAGGATATTGGGATG

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

NA

NA

NA

NA

NA

ORF sequence:

NA

Peptide sequence:

NA

IRESfinder result

IRESfinder score

0.878867174

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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