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mmu_ciPpp2r5b_94
Basic information of circular RNA
PanCircBase ID:
mmu_ciPpp2r5b_94
mm39_Chr. Position ID:
chr19|6280321|6280415|-
Gene name:
Ppp2r5b
Transcript:
ENSMUST00000025695.10
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
10
Exon/intron offsets:
0
Genomic length:
94
Exon/intron sizes in nt:
94
Flanking exon/introns:
chr19:6280305-6280415
Splice length:
94
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATGAAGGGCTCTCACAACCCTGACAGTAGTGGGGAGGGCTCAGCTTCCAGAAGGCGAGCAGGTGTGTACTTTAGGGGAATGTGAGCTGCTGC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGCGAGCAGGTGTGTACTTT
60.6
TCCCCACTACTGTCAGGGTT
59.81
77
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GGCGAGCAGGTGTGTACTTT
60.6
CTCCCCACTACTGTCAGGGT
60.25
78
PCR template sequence:
TCCAGAAGGCGAGCAGGTGTGTACTTTAGGGGAATGTGAGCTGCTGCGTATGAAGGGCTCTCACAACCCTGACAGTAGTGGGGAGGGCTCAGCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-23b-3p(1), mmu-miR-23a-3p(1), mmu-miR-296-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TGTGAGCTGCTGCGTATGAAGGGCTC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.50766549
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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