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mmu_ciPpp1r37_890
Basic information of circular RNA
PanCircBase ID:
mmu_ciPpp1r37_890
mm39_Chr. Position ID:
chr7|19266998|19267888|-
Gene name:
Ppp1r37
Transcript:
ENSMUST00000058444.10
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
8
Exon/intron offsets:
0
Genomic length:
890
Exon/intron sizes in nt:
890
Flanking exon/introns:
chr7:19266984-19267888
Splice length:
890
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTCTAGGGGCCTTGTTCATTGGCCTCATCCCGCCTAGCCCCTACGAATGTTTAATTTTTAAATCTTTTATTACATTTTGTGTGTGTGTGTGTGCGTGCGTATGTTTGCATGTAGAGGTCAGATGACGGCTTGCAAGAGGCAGTTTTCTCTTTCCACCATGTATAAATATTTCAGGTTTCGAACTTAAAGCCTCAGGCCATCTCACCAGCCCTGAGCCCTGTTTCTTTCAAATTCTTTCTTTTTCTTTTTTGGGTTTTTCAAGACAGGGTTTCTCTGTGTAGTCCCGACTAACCTGGACTTGCTGTGTAGACCAGGCTTGTCTCAAAACAAACATCCACCTGCCCCTGGCTCCCAAGTGCTGGGATTAAAGACATGTGCCACTACTGCCTGTCTGGGCCATTTCTGTAATTGCATACTTTTTTGTAACAGACTATGTAGGACAGTGCTTTGCACAAACTGAATATGTTGGCTTAAAAGGTTAATATTTCTGAAAGCAGTCAGTAAGTCTTTAGTCTTTTGATCATCACATGACATATAAAGTAATTCTAGCAGATACAAATACTCTCAGAGGAGGGGGCATTTGTGTGCTACTGACCAGCTCCCCTTCCAGAAGAAGGCTGTCTTTAGGGTCCTGGAAGCCATTAAAAGACAGGCTGGGTGAGGGCAGAGAGCCAGCCGGTGCTTTGGGGGCCACCTGGACTCTGATGGGAAGTGGGCAGTTTGAGCTTTGAGGGGACACTCAGCATAGGAGGAACTTGTTTCCCAGGCCTGTGATAGGATTGTGCCAGGCAAGAAGAAAGGATGTGTGCCTGGCTCCTTTTTCTAGCTCCTTTCCTGACATACCTTCCTGGCTTTTCCTCCACCCATGGCTCCCTTCCTCACCTTC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTCCTGGCTTTTCCTCCACC
59.89
CGCACACACACACACACAAA
60.11
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCTTCCTGGCTTTTCCTCCA
59.59
CGCACACACACACACACAAA
60.11
143
PCR template sequence:
AGGCAAGAAGAAAGGATGTGTGCCTGGCTCCTTTTTCTAGCTCCTTTCCTGACATACCTTCCTGGCTTTTCCTCCACCCATGGCTCCCTTCCTCACCTTCGTGAGTCTAGGGGCCTTGTTCATTGGCCTCATCCCGCCTAGCCCCTACGAATGTTTAATTTTTAAATCTTTTATTACATTTTGTGTGTGTGTGTGTGCGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-138-5p(1), mmu-miR-339-5p(1), mmu-miR-149-5p(1), mmu-miR-431-5p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-27a-5p(1), mmu-miR-466b-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTTCCTCACCTTCGTGAGTCTAGGGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIPPP1R37_890_ORF_3
0.815
-0.301319194
0.019481618
150
ORF sequence:
ATGGCTCCCTTCCTCACCTTCGTGAGTCTAGGGGCCTTGTTCATTGGCCTCATCCCGCCTAGCCCCTACGAATGTTTAATTTTTAAATCTTTTATTACATTTTGTGTGTGTGTGTGTGCGTGCGTATGTTTGCATGTAGAGGTCAGATGA
Peptide sequence:
MAPFLTFVSLGALFIGLIPPSPYECLIFKSFITFCVCVCACVCLHVEVR
IRESfinder result
IRESfinder score
0.856597622
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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