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mmu_ciPlrg1_456
Basic information of circular RNA
PanCircBase ID:
mmu_ciPlrg1_456
mm39_Chr. Position ID:
chr3|82966687|82967143|+
Gene name:
Plrg1
Transcript:
ENSMUST00000150268.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
4
Exon/intron offsets:
0
Genomic length:
456
Exon/intron sizes in nt:
456
Flanking exon/introns:
chr3:82966687-82967143
Splice length:
456
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTAACAGTAAGGCCGCACAGATGTGTGGGCACTGTGTCTACACAGACATAGTGTCTGTTGGCTCGGACAGTTGTCAGGTACCTAAATTGAAATAGATGAGGATGTATGGCTGAGATGTACTTGAATGCATGGGTATAGACAGGCTGGCATGAGGGAAGCAAATATGCTTGGACAGAGGACAATAAGCCTTATGTTTGCAGTTCACATGGGCATTGTGTACTTCTTTTAGTCACTTAATTTACTCTTGGAAGTAGTCTGTTAATATTTGCATGACTACTATTTGCTTATGAGTATACTGTCTGAATCAATAGGAAATTAACTTTATTGTCTTGCGTTCTCTTAATACCAAGCTGCTTGTGTTCAGTCAAATTTGATCTGTGTATTAGCCTGTATTTATTATAAGGAATTAAAACCCAAGTCAAGCTGAGTGTAACGAAGGTTGTTGTGAACAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCTTGTGTTCAGTCAAATTTGA
56.03
GTGTAGACACAGTGCCCACA
59.89
147
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGTGTTCAGTCAAATTTGATCTGTGT
59.9
GTGTAGACACAGTGCCCACA
59.89
144
PCR template sequence:
GCTTGTGTTCAGTCAAATTTGATCTGTGTATTAGCCTGTATTTATTATAAGGAATTAAAACCCAAGTCAAGCTGAGTGTAACGAAGGTTGTTGTGAACAGGTAAGTAACAGTAAGGCCGCACAGATGTGTGGGCACTGTGTCTACACAGACATAGTGTCTGTTGGCTCGGACAGTTGTCAGGTACCTAAATTGAAATAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-26a-5p(1), mmu-miR-26b-5p(1), mmu-miR-697(1)
siRNAs for circular RNA silencing
Junction sequence
TTGTTGTGAACAGGTAAGTAACAGTA
siRNA sets
TTACTTACCTGTTCACAAC, TGTTACTTACCTGTTCACA, ACTGTTACTTACCTGTTCA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.781134351
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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