top of page
mmu_ciPhospho2_33
Basic information of circular RNA
PanCircBase ID:
mmu_ciPhospho2_33
mm39_Chr. Position ID:
chr2|69620248|69620281|+
Gene name:
Phospho2
Transcript:
ENSMUST00000112266.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
33
Exon/intron sizes in nt:
33
Flanking exon/introns:
chr2:69620248-69620629
Splice length:
33
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAAGGACAGCCCTTTGACCACCGAGCCACAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
PCR template sequence:
GACCACCGAGCCACAAGTGAAGGACAGCCCTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-540-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CACCGAGCCACAAGTGAAGGACAGCC
siRNA sets
GCTGTCCTTCACTTGTGGC,TCCTTCACTTGTGGCTCGG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.667526404
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page