top of page
mmu_ciPeg3_588
Basic information of circular RNA
PanCircBase ID:
mmu_ciPeg3_588
mm39_Chr. Position ID:
chr7|6720209|6720797|-
Gene name:
Peg3
Transcript:
ENSMUST00000051209.11
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
4
Exon/intron offsets:
0
Genomic length:
588
Exon/intron sizes in nt:
588
Flanking exon/introns:
chr7:6720195-6720797
Splice length:
588
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTATCACATCCCAGCAATGCCACATTATAAAGAGGTACAGAGGCACCAAAGCGTCCACCGAGACAATAGCCCCAGAGTGTTCAGAGTCACACAGAGTCCCAAGTAGAGGAGATTAACTGAGACATTTGTATATCAAAGCAGGCACCTACAATGGAATGGCATTTGAGGGTTTTTAAACAATAAAATATTTGTACTATTTATTATCTACTTCAGGCAGAATCTACTACTAGCAGAATTGTTTGTAGGTTAGACATGTGTTCTCCTTTCTCTTTACAATAGAATGCTGTGCAATTTAAACTCAGCTGGCCTGTGCTAGACATAGAAGATCTATGGTCCCTTTCCTGAATTTAGACTTGAGAACTTAGCAGCTGAGAAAACAATTGGGAGGTCTGAAGTGGAGCTAGCTTACAGACTTAGTTTGGGTCCTTTTCCGTGAAGCAAGCCCTACTTGGGAGGAGCTTGCAAGATAGCTACTGAGCCTTGGAGTCTAGAACCTTCCTTTTGGATCCATCTCATCAAGGGAGGCATGTGTGCACACACAAAGGAAACAGAGATATGTCAAAGCACATCTGACCACTCAAAAA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCATCTCATCAAGGGAGGCA
59.16
ATTGTCTCGGTGGACGCTTT
59.97
148
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCATCTCATCAAGGGAGGCA
59.16
GACTCTGAACACTCTGGGGC
60.04
169
PCR template sequence:
AGTCTAGAACCTTCCTTTTGGATCCATCTCATCAAGGGAGGCATGTGTGCACACACAAAGGAAACAGAGATATGTCAAAGCACATCTGACCACTCAAAAAGTGAGTATCACATCCCAGCAATGCCACATTATAAAGAGGTACAGAGGCACCAAAGCGTCCACCGAGACAATAGCCCCAGAGTGTTCAGAGTCACACAGAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
9
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-32-5p(1), mmu-miR-150-5p(1), mmu-miR-363-3p(1), mmu-miR-218-5p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-669d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GACCACTCAAAAAGTGAGTATCACAT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIPEG3_588_ORF_1
0.4368
-0.013746577
0.035495399
168
ORF sequence:
ATGTGTGCACACACAAAGGAAACAGAGATATGTCAAAGCACATCTGACCACTCAAAAAGTGAGTATCACATCCCAGCAATGCCACATTATAAAGAGGTACAGAGGCACCAAAGCGTCCACCGAGACAATAGCCCCAGAGTGTTCAGAGTCACACAGAGTCCCAAGTAG
Peptide sequence:
MCAHTKETEICQSTSDHSKSEYHIPAMPHYKEVQRHQSVHRDNSPRVFRVTQSPK
IRESfinder result
IRESfinder score
0.758367281
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page