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mmu_ciOxr1_52
Basic information of circular RNA
PanCircBase ID:
mmu_ciOxr1_52
mm39_Chr. Position ID:
chr15|41694473|41694525|+
Gene name:
Oxr1
Transcript:
ENSMUST00000231215.2
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
52
Exon/intron sizes in nt:
52
Flanking exon/introns:
chr15:41694473-41696862
Splice length:
52
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATGGGAAAAAAGGGAGAAGACATCAGCCAGTTAACCATAAATACACTCTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
PCR template sequence:
AGCCAGTTAACCATAAATACACTCTGGTATGGGAAAAAAGGGAGAAGACATC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-211-5p(1), mmu-miR-204-5p(1), mmu-miR-207(1)
siRNAs for circular RNA silencing
Junction sequence
TAAATACACTCTGGTATGGGAAAAAA
siRNA sets
TTTTTTCCCATACCAGAGT, TTTTCCCATACCAGAGTGT, TTTTTCCCATACCAGAGTG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIOXR1_52_ORF_1
0.5249
-0.070209504
0.021447862
102
ORF sequence:
ATGGGAAAAAAGGGAGAAGACATCAGCCAGTTAACCATAAATACACTCTGGTATGGGAAAAAAGGGAGAAGACATCAGCCAGTTAACCATAAATACACTCTG
Peptide sequence:
MGKKGEDISQLTINTLWYGKKGRRHQPVNHKYTL
IRESfinder result
IRESfinder score
0.63673548
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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