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mmu_ciNup93_1160
Basic information of circular RNA
PanCircBase ID:
mmu_ciNup93_1160
mm39_Chr. Position ID:
chr8|95033274|95034434|+
Gene name:
Nup93
Transcript:
ENSMUST00000079961.14
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
16
Exon/intron offsets:
0
Genomic length:
1160
Exon/intron sizes in nt:
1160
Flanking exon/introns:
chr8:95033274-95034468
Splice length:
1160
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAGGTTAAATGTGTCCTTGGTTGTCAGAATGTAGTTATACTGTAGGAGTCATCTGGATACATGAATTGTAACAAATGGAAGGATGAAATTATAAGCCCAACTGATAGCATTAATTAGTTTTACACACATTTTTCTTTCTTTAAAATTTATAAATTTGTAATTAGTGTTTTCATATGTTCTGTCTGACATTTTTCTTAAAGCTAAGGCAGCTGTATTTTTGACTCAGAAAACATGAAGAAAAGTTAGGGTTTACTCTGCCTACTCTCTCCAGATGGGAAAGTTAGACATGCACTTCACCTCTGAGTACTCAGAACTCCCCACCAACCCCAGAAATGCCATCTCCCAAGAGCCTTAGCAGCTCCTCTGGGACTTACCATGCCATGGGACACTGTAAGAGAAGGGCAGAAGCCCCATGTCAGGGCCCAGTCCTAACCCTGGCCCCCCTGGGTGCCCACAGCTACTCACTTTCCTGTGTAAACCTCATGGTTTGGCCTGGCGCCCAGATGAGGGGCCTGCCGGTACTGATAGTGGGGGCCATCTTCTTGGCTTTGTGTAGTATCTTACTCAGGTAAGACAGTCACCCACAAAGTGAGAACCAAAGCAGAAATAAAAGTGGCTAAGTACTTTCTTCAAGAGCACACAAGTGGAATCTGAGCATGCAGTGCATTTCCTGGGTTGAGGGGCAGGGCACTGGAATTTGGCCGAGCCCTGAAGGTGCCTTAGCATGCACGGTCAAGCACAGTGTTGCGCAGTCGGTCTTCCCTCCCTGAGTCCTGGGGCCTGTCAGACTCTCCTGATCGTGTGCCTGCTAGTGAGTGGTGACAGAGGCTATTTCAAAGTCCTCACCACCACTTCCTGCATCTGTCTTAGAAAGCAAATTGAAAGTCCTAAAAGTATTTTCTCATAACATCCTGCTTGCCAGCAAATTTAGAATCACTAATAGTTTTACCTACTCTTAGTCATTTTGGAAAATCTCTCAGAAACCACTAATGTGCCATAGCTGACTCCATAGTGCTCCCATTAACGTGCCCTGTCTTTTTCTGTGGTTATGGTGTGGGGCCTTATGTCTTCAGGAGAGCCGAGTCTGGCAGATGAAGACTGTTGACTAGGGCAACTGTTCAGCTGTGTGTTCCGAGACACAGTTGCTGCGGGGTGTTGA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGTCTTCAGGAGAGCCGAGT
60.25
TGTATCCAGATGACTCCTACAGT
57.87
157
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCTTCAGGAGAGCCGAGTCT
59.67
TGTATCCAGATGACTCCTACAGT
57.87
155
PCR template sequence:
CCTTATGTCTTCAGGAGAGCCGAGTCTGGCAGATGAAGACTGTTGACTAGGGCAACTGTTCAGCTGTGTGTTCCGAGACACAGTTGCTGCGGGGTGTTGAGTAGGTTAAATGTGTCCTTGGTTGTCAGAATGTAGTTATACTGTAGGAGTCATCTGGATACATGAATTGTAACAAATGGAAGGATGAAATTATAAGCCCA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
12
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-155-5p(1), mmu-miR-134-5p(1), mmu-miR-200a-3p(1), mmu-miR-222-3p(1), mmu-miR-132-3p(1), mmu-miR-185-5p(1), mmu-miR-214-3p(1), mmu-miR-22-3p(1), mmu-miR-212-3p(1), mmu-miR-218-5p(1), mmu-miR-669d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TGCGGGGTGTTGAGTAGGTTAAATGT
siRNA sets
TTTAACCTACTCAACACCC, ATTTAACCTACTCAACACC, TAACCTACTCAACACCCCG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.77234826
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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