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mmu_ciNucb2_30
Basic information of circular RNA
PanCircBase ID:
mmu_ciNucb2_30
mm39_Chr. Position ID:
chr7|116132396|116132426|+
Gene name:
Nucb2
Transcript:
ENSMUST00000032895.15
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
11
Exon/intron offsets:
0
Genomic length:
30
Exon/intron sizes in nt:
30
Flanking exon/introns:
chr7:116132396-116135096
Splice length:
30
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAACAAGGCCAACTTTACAGGGACATGAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
PCR template sequence:
TTACAGGGACATGAGGTAACAAGGCCAACT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
ACAGGGACATGAGGTAACAAGGCCAA
siRNA sets
TTGTTACCTCATGTCCCTG,CCTTGTTACCTCATGTCCC,CTTGTTACCTCATGTCCCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.606834083
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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