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mmu_ciNr2c2_830
Basic information of circular RNA
PanCircBase ID:
mmu_ciNr2c2_830
mm39_Chr. Position ID:
chr6|92134480|92135310|+
Gene name:
Nr2c2
Transcript:
ENSMUST00000113460.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
8
Exon/intron offsets:
0
Genomic length:
830
Exon/intron sizes in nt:
830
Flanking exon/introns:
chr6:92134480-92135310
Splice length:
830
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAACACTCTCTCCTGTGTTGCAGTGCAGGCTGCTTTTCCAACTATACCTGCTCTCTTGGCCATCAGACATGATGCTGAAAGCATAGCCTCCTGTAGCTACATTAATTTCTCATGATAATAGTCATCCTAGGACTTGTTCTAAAGATGCTTGTGGTTTTCAGATACTCCACTCAGGGCTGAATGGCAATAGTCACTATCACATGGCAGCTTTGTGGACATTCAATGGTTCTTCACATGGCATCTTTGTAGACATTCTATGGTTCTGTTCCCTATTAATGTAATCCCCTTATTCTACATATTGGCAGGCTCCCATTATGCTGGGAAGGTAGCTATTTTTTCTAAAGCAGCCTTTTGTAAAAGCTCCAGTTCTTTCCCATTAGATAATTTGTAATAGGCTAACAAATGAGCCATAAATAACGAACTTATAGACTGAGATGTCTGTTGGTCCAAGAGGTCATCTCCCATTGTGCCATCTGCACAGTATGTTGTGGTTCTACCGTAATTTATTAATCAGTTCTGTGCTTAAACTTTGCTACTGGGGCTGGGTGGAGTGGTGTGCTACTTTATCTGTTCTGTCATTTTATCACAATGTTATTGCATCACATATGTGGATCTGTGTATGTGGCTGTAACCAAAATACAAAAACACAAAAGCCTGATCCATTCTGATCCAGTTGATATACAAAAAGATCTTCCTAGCATGACTCCATTCACACCTAGAAGCTGGCCTTAGATAAACATGATACCTTCTTCATTTCATTGCCCTTAAGTCATTCTCCTGTGTATGCTCATTTTTTAGTGTTACTATATTACTATTATTTTTTTAATAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGCCCTTAAGTCATTCTCCTGT
59.09
TGTCTGATGGCCAAGAGAGC
59.75
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGCCCTTAAGTCATTCTCCTGTG
60.31
TGTCTGATGGCCAAGAGAGC
59.75
140
PCR template sequence:
TAGATAAACATGATACCTTCTTCATTTCATTGCCCTTAAGTCATTCTCCTGTGTATGCTCATTTTTTAGTGTTACTATATTACTATTATTTTTTTAATAGGTAACACTCTCTCCTGTGTTGCAGTGCAGGCTGCTTTTCCAACTATACCTGCTCTCTTGGCCATCAGACATGATGCTGAAAGCATAGCCTCCTGTAGCTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-320-3p(1), mmu-miR-22-3p(1), mmu-miR-183-5p(1), mmu-miR-539-5p(1), mmu-miR-466b-3p(1), mmu-miR-338-3p(1), mmu-miR-7a-2-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ATTTTTTTAATAGGTAACACTCTCTC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.848641376
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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