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mmu_ciNfic_1201
Basic information of circular RNA
PanCircBase ID:
mmu_ciNfic_1201
mm39_Chr. Position ID:
chr10|81244243|81245444|-
Gene name:
Nfic
Transcript:
ENSMUST00000105321.10
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
1201
Exon/intron sizes in nt:
1201
Flanking exon/introns:
chr10:81244243-81245444
Splice length:
1201
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTCAGCTAGAGCTGAGGCAGGAGGATTATGACTCAAAAGGGTAGCCTGAACTAAATAGTGGGAGTGTCGAAGCAGTGGGGGGAAAAGAGGCATGGCCAGGGTGGAGCCCTGCCTAGAATACCCCAGTTAGGGGGCGTGGTCAGGGTGGAGCCCCCCATTGCGGGGCGGGAGGGGTCCTGTTTCCTGGGGGTGGGGGGCTTTGCTCACATCTCTCTGGTGATTGGACAGCACTTTCCTTACATCATGGGCCTTTGCTGCCAACACAGGTTTTTTGAGGGAGGGGAGGGAAGATGAGAGAAGTGCATGAAGCCTTTTACTGGGCTCAGAAGGGAGAGACAAGGCCCTGAGCCCTGCAGTGCCAGGAGGCTAGTGACCCCGGCCATGACCCTGGGTCCTCCTGGGCCTCTTCCTGCCTCTTCCCTTTCAACCAGACTGGAAGAAGGTGGGGCCCCAAGGGAGGATCCCAGTGCTCAGGACTCCCTTGCCTCTGGACATGGGCCTGGTGGGCGCTGTACAAACAGGAAATCCCCCCCCTTCCGCCACCATTTGGGTCAGCAGGAAACGGGTGGGACACTTCCATTGGGCACAGCAGGGCCACCCCAGCCACAAGGGCGGTGCTCAGTGCATGTGGACGGTGCTGCCCCCTGGGGGCCGGTCCCACTGCTGCTCTGCCTTGTGTGCTCCCTGCTGCTGGCTCAGCCCTGGTGACTGCGATTACACGCCTGGACCTTGTACTGTCCGTGCCATGGCGTCTCACTTGCAGTAGTTGGGTCCAGCCCGCCCCAGCTCCCACCCACAATGAAGCCAACTATGTAGTTACAGACTCTTCGCTCATACCAAGTCTATATCCACAAGAACGACCATCCCCACAGACCTATCTCCCAAGTCCGTTATGCTTCATGGCTGTGTAGTTCTCCGTCGTAGCTACTTCCAGCCCTGTGGCACTCACACCACGTCCCCACCACAGCATAGAGCGCAGATCCCAACGGACTGGTGGGTAAAAAACACTTGCTGCCAGTGAGGGGGACGGATCATCCACGTGACCGCTGAGCGTGAGTGCAGATGTCATGTGACCATCAGGGCTCAGATAGGGTAAGGGGTTGCAGGCCCCTCGTGAGCCGTTACCCTTGCTGCAGGGACACTATGGAGAAAGGAGGTGGCCATCTCGGCTGACCTCTGACTCTGTGCTCTTTCCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTGCTGCAGGGACACTATGG
60.04
CTGCTTCGACACTCCCACTA
59.11
149
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTGCTGCAGGGACACTATGG
60.04
CACTGCTTCGACACTCCCAC
60.95
151
PCR template sequence:
GGGTTGCAGGCCCCTCGTGAGCCGTTACCCTTGCTGCAGGGACACTATGGAGAAAGGAGGTGGCCATCTCGGCTGACCTCTGACTCTGTGCTCTTTCCAGGTGAGTCAGCTAGAGCTGAGGCAGGAGGATTATGACTCAAAAGGGTAGCCTGAACTAAATAGTGGGAGTGTCGAAGCAGTGGGGGGAAAAGAGGCATGGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
13
Interacting miRNAs (#binding sites)
mmu-miR-296-5p(1), mmu-miR-93-5p(1), mmu-miR-20a-5p(1), mmu-miR-17-5p(1), mmu-miR-106b-5p(1), mmu-miR-146a-5p(1), mmu-miR-328-3p(1), mmu-miR-184-3p(1), mmu-miR-709(1), mmu-miR-214-3p(1), mmu-miR-183-5p(1), mmu-miR-705(1), mmu-miR-146b-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GTGCTCTTTCCAGGTGAGTCAGCTAG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.473448832
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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