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mmu_ciNbr1_217
Basic information of circular RNA
PanCircBase ID:
mmu_ciNbr1_217
mm39_Chr. Position ID:
chr11|101463398|101463615|+
Gene name:
Nbr1
Transcript:
ENSMUST00000103099.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
17
Exon/intron offsets:
0
Genomic length:
217
Exon/intron sizes in nt:
217
Flanking exon/introns:
chr11:101463398-101463633
Splice length:
217
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGGGGTTAAATATCTGTAAAGCACGTGCCTTCCCTTTCCATCCACCTCTCCTCACACGTCCATTCCTCATTACCTCTACCTCAGCAAATCGATGTCCCATGGCATCCCTCGCTCTCTACGTCTCATGACAGCAGGGGCAGCTCTTCCCCCACCCAGGCTTAGGATGCACTGACTGGTGAGAGCTCTCAGCTCTTCAGACACTAAGTACAGGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TACGTCTCATGACAGCAGGG
59.18
TGGATGGAAAGGGAAGGCAC
59.96
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TACGTCTCATGACAGCAGGG
59.18
GTGGATGGAAAGGGAAGGCA
59.96
146
PCR template sequence:
TCTACGTCTCATGACAGCAGGGGCAGCTCTTCCCCCACCCAGGCTTAGGATGCACTGACTGGTGAGAGCTCTCAGCTCTTCAGACACTAAGTACAGGCAGGTAAGGGGTTAAATATCTGTAAAGCACGTGCCTTCCCTTTCCATCCACCTCTCCTCACACGTCCATTCCTCATTACCTCTACCTCAGCAAATCGATGTCC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-124-3p(1), mmu-let-7a-5p(1), mmu-let-7e-5p(1), mmu-let-7b-5p(1), mmu-let-7c-5p(1), mmu-miR-148b-3p(1), mmu-let-7d-5p(1), mmu-miR-370-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TAAGTACAGGCAGGTAAGGGGTTAAA
siRNA sets
TTTAACCCCTTACCTGCCT,TTAACCCCTTACCTGCCTG,TAACCCCTTACCTGCCTGT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.572978395
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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