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mmu_ciNbas_2604
Basic information of circular RNA
PanCircBase ID:
mmu_ciNbas_2604
mm39_Chr. Position ID:
chr12|13424830|13427434|+
Gene name:
Nbas
Transcript:
ENSMUST00000042953.10
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
26
Exon/intron offsets:
0
Genomic length:
2604
Exon/intron sizes in nt:
2604
Flanking exon/introns:
chr12:13424830-13427434
Splice length:
2604
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGGAGCCCTGGAAGCCAGGCTCACCCAGGCTTCTTAGTCTAGTAGTAAAAGAAAGGCACTGCTTTTCTAAGTGTTCATCAGCAGAGAACTTTGAGACTATAAGAAAGACAAAAGTCTGGGAGATAGCTTAATGGTGGGGTGAGTGCTCTATATTCACGTGGCCTTGAGTCCACCCCAGCCCTTCAAAATATAAAGGGGAGCCATATAGAGATAAAATTAAAATTGTTATCTTGGTGTCTGGAGATAGATTCCACTGTAATTATAATTTCTGATATCATTCCGTCAGTGTGATCCTCACATACTGAGTAGTAAGAACCCCAGCACTGCAAGGAGAATCTCTGATCGTCTACAGCACTGACCTCTTGGTTCTTAAATTGGGCTTTAGTTTTCTTTTTCTTTCTTATCTTTGCTTGTATTTATTCTGTGAATTCTTCCTTCTTAGTCTGTGTTTAGTAGTTCTTTCCTTGGACAACAGGTAGCTGTCATTCTCTCTCCCTTTGCAGTCTAGTTCCTAGGTATCCCACATGGATGCCCAGTAGTAGCCATCAGCCTTATCTTTATGCCTTTGGTACTTCAGCCAAGGTGCTCAGCTTTGCTGGTCTTCAGCTTCTTCAGTAAAATTGAATATTTAGATAGGAAGGCTTCCTTGTTGTAGGTTTCTTCTGTCCCTCTTCTCATGTCCGAGGGTTGTTTAGTTTTTACTAGCTGGATGATAGTTATCCCCATGTTTTCAGTCTACTCTGCAGCACTGTTCCCATACACGTGGATACAGGGAAAAGATGAATGGAAGATGATTTTTGCACAGAAGCAGAGTATTATCCCAGAATCTGACCTTTTGATTTTCTTTTTTTAAATTAGATATTTTCTTCATTTACATTTCAAATGCTATCTCCAAAGCCCCCTATACCCTACTCCCCAACCCACATACTCCAGCTTCCTGGCCCCTGGCATTCCCCTGTACTGGGCTGGGGTATATGATCTTCACAAGACCAAGGGCCTCTCCTCCCATTCATGGCCGACTAGGCCATCCTCTGCCATATATGCAACTAGAGATACAGCTCTGGGGCACTGGTTAGTTCATACTGTTGTTCCTCCTATAGGGTTGCAGACCCCTTCAGCTCCTTGGGTACTTTCTCTAGCTCCTTCATTAGGGTCCCTGTGTTCTATCCAATAGATGACTGTGAGCATCCACTTCTGTATTTGCTAGGCCCCGGCGTAGTCTCACAAGAGAGACCTATGTCAGGGTTCTGTCAGCAAAATCTTGCTGGCATATGCAATAGTGTCTGGGTTTGGTGGTTTTATACGGAATGGATCTCTGGGTGGGGCAGTCTCTGGATGGTCCTTCCTTCTGTCTCAGCTCTGAACTGTAGTAGATTGGCTTCCGTCATATTTATCCAGCTACCATAGGAGCATCACTAACAGTCACCCTCCCTGTCTAATGATCCAAGACACACTGGATGTCACAGCATCCCTTAGGAAAAAGCAGTCTTGTTCAAGCTGTTTAACCCAAATCCTATCAGTCCTTTGGGCTGACCTTACGGCTTACAGCTAATGTAGGTGCTTTATACCTCCATTACTGAGTTTTTCCTCAAGAGATATGAGTAAGTGCTTTCCTCATGAAGGGTGCCAACAATTGACCAGAGGACAATTCTAAACTCAGCTTTGTGAACTAATGAAGTTATTGATCTTACTTATGTGGCACGGGTGCCAGACATGTAGATGACCCCAGAGCAGCCACACTGCTGTAAAGGCTGATTTCTGTATAGATGGAGCATGCCCTTCAGTTAACTGTTCACTATTTTATGTACTGTAGAACCTCTTAAACCCCAGACCATGCGCAATTGGGGCAGAATCACATATAGTTGGTGTGGAGGAGCAGGGGATGGCTGAAACCTCATGCAAGGGTCTGCTGACCTCCACTCCTTCCTTTCTTGAGAGGCTGTCAACAGGCCCCGTCTCAGTGTTCTCTTCTGATGCATCACAGCTTTTCCAGATGGAAGTGGTGATAGACGTCATGCTCATAGGATAGTGTTCAACCACAGCGCATAGAGAGAGACAGATGTGCTACTTAGGAACGCAGTCTGCTATGCACAGAGCGTTACACCACCTATGGGGCAACTGGTCTTTTCCATGTGCTAAGTTAGAGCCATGTAGAAAAGCACATTATTAAAAGAGGCCACATTGCACTTTAAAGGAGCCCTTGGGGACATAGTCCTCTCCTCATTTGCAAGTATAAAGTAATATATGAACATAGTTGAAATGAAGATTTTAAGACAATAAAGAGCTGTTTGGTGCTTACTTTTCCAGTATTGGATTTTGCTCATTTTAATCTTAATCCATTGAACTGATTCAGTGAAATAGGCATATGTGACTTTACTATATGCTTTTGGGTGTGACAAGAGGTAGACCGGATAGTCATGCTAGCAGTACCTTAAGGAAATAGTGGAGGATCTTGGAGGTCTTTGGATGGTATGTAGGAAATAAGCCTCAGATTTTAGTTGAGCAATATAATACTATCACAAATAAGAGAAACACCCTTTTCTCTTCTATTGTTTTATATTTTATTAAAAACTCCCTTCTAAACCTAATTTCTATTTTTAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCACAAATAAGAGAAACACCCT
55.29
ACACTTAGAAAAGCAGTGCCT
57.79
162
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCACAAATAAGAGAAACACCCT
55.29
TGAACACTTAGAAAAGCAGTGCC
59.68
165
PCR template sequence:
AGCAATATAATACTATCACAAATAAGAGAAACACCCTTTTCTCTTCTATTGTTTTATATTTTATTAAAAACTCCCTTCTAAACCTAATTTCTATTTTTAGGTAAGGAGCCCTGGAAGCCAGGCTCACCCAGGCTTCTTAGTCTAGTAGTAAAAGAAAGGCACTGCTTTTCTAAGTGTTCATCAGCAGAGAACTTTGAGAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
18
Interacting miRNAs (#binding sites)
mmu-miR-320-3p(2), mmu-miR-185-5p(2), mmu-miR-340-5p(2), mmu-miR-137-3p(1), mmu-miR-1a-3p(1), mmu-miR-31-5p(1), mmu-miR-101a-3p(1), mmu-miR-130a-3p(1), mmu-miR-298-5p(1), mmu-miR-101b-3p(1), mmu-miR-203-3p(1), mmu-miR-139-5p(1), mmu-miR-130b-3p(1), mmu-miR-301b-3p(1), mmu-miR-218-5p(1), mmu-miR-350-3p(1), mmu-miR-574-5p(1), mmu-miR-202-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTCTATTTTTAGGTAAGGAGCCCTG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.81988494
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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