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mmu_ciNav2_946
Basic information of circular RNA
PanCircBase ID:
mmu_ciNav2_946
mm39_Chr. Position ID:
chr7|49213871|49214817|+
Gene name:
Nav2
Transcript:
ENSMUST00000183659.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
21
Exon/intron offsets:
0
Genomic length:
946
Exon/intron sizes in nt:
946
Flanking exon/introns:
chr7:49213871-49214832
Splice length:
946
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTCTAAATCAGCGCTGAGTGGCCGTGCTTGTCACTCACATATTGTTATCAAGTGTGTCAAGCATAATTATAAGCATCCCGTCTGCAGAGAGTGTTCCCATTATGAAAGGATCAGCTCGTGGGAGAAAACGATTGGAAATTTACAAACAACTGTTATCACATCCCCCTTGAGAATGGGGAGAGGGCTCCGTGGGTGAAGGGCTTGCTGCACAAGCAGGAAGACCCAAGTTCTGATCCCCAGTCCCCACGTAAAAGATGAGTACACACATATGTAGCCCCACCTTACATCCACATCTTCATATGAAAGGGGCTCCTCATCCCTCAACTAGAACATATATCATTCTTCCTAATTTATTAGTCTTTGGACTTTCTGATGGGTAGATTTGATTGTCCCATTTTACAGAATTATACCAGAAAAGAAGGCAATCAAAATCCTCAATTTCAGGGCCTGGGCAGATGGCTCAGGAGTTAAGAGCACTTGCTGCTCTTCCAGGGAATCTAACTTTGGTTCCCAGTGCCCATGTCAGCTGGCTCTCAACCCCCTGTGACTCCAGCTCCAGAGGATCCCAATGCCACTGGACTCGAAGAGCACCCGCACTGATGTCCACCAGCACATACAGACACGCACACCTACCCATGGTTTAAAATGATAAAAGTAAATCTCAGGGGCTGGAGAGATGGCTCAGCAGTTAAGAACATTAGCTGCTCTTCCAGAGGACCTGGGTTCAATTCCCACATGGTTACTCACAACCACCTGTAGGTAGTTATCATTTGGGGAAAGTCAGTGTCCTCTTCGGGCCTCCATGGTCACACATACGTCCATGCAGGCAAATGCCCACATGTATAAAATAAAAATAAATCTTAAAAAAAAAATCTAGATTTTTCCCGAGTTTGCTGGGCTGCACTGTTCTTTCTCCTCTGTTGTTCTAATGTCCTTTATTTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGGCTGCACTGTTCTTTCT
59.82
CACTCTCTGCAGACGGGATG
60.18
145
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGGCTGCACTGTTCTTTCT
59.82
GAACACTCTCTGCAGACGGG
60.39
148
PCR template sequence:
ATAAAATAAAAATAAATCTTAAAAAAAAAATCTAGATTTTTCCCGAGTTTGCTGGGCTGCACTGTTCTTTCTCCTCTGTTGTTCTAATGTCCTTTATTTTGTGAGTCTAAATCAGCGCTGAGTGGCCGTGCTTGTCACTCACATATTGTTATCAAGTGTGTCAAGCATAATTATAAGCATCCCGTCTGCAGAGAGTGTTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
17
Interacting miRNAs (#binding sites)
mmu-miR-466a-5p(2), mmu-miR-1187(2), mmu-miR-466p-5p(2), mmu-miR-210-3p(1), mmu-miR-221-3p(1), mmu-miR-205-5p(1), mmu-miR-322-5p(1), mmu-miR-152-3p(1), mmu-miR-148b-3p(1), mmu-miR-148a-3p(1), mmu-miR-222-3p(1), mmu-miR-125b-5p(1), mmu-miR-351-5p(1), mmu-miR-125a-5p(1), mmu-miR-297a-5p(1), mmu-miR-383-5p(1), mmu-miR-5101(1)
siRNAs for circular RNA silencing
Junction sequence
TGTCCTTTATTTTGTGAGTCTAAATC
siRNA sets
TTAGACTCACAAAATAAAG,GACTCACAAAATAAAGGAC,AGACTCACAAAATAAAGGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.68033219
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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