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mmu_ciMyt1_764
Basic information of circular RNA
PanCircBase ID:
mmu_ciMyt1_764
mm39_Chr. Position ID:
chr2|181452192|181452956|+
Gene name:
Myt1
Transcript:
ENSMUST00000081125.11
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
14
Exon/intron offsets:
0
Genomic length:
764
Exon/intron sizes in nt:
764
Flanking exon/introns:
chr2:181452192-181452957
Splice length:
764
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTGATGCCTTGACAGACGGGCTTCCCAGGGAAAGCAGACCTGGTCCTAGAACCCAACAACTACCTAGATCCAGGTAGCTCACAGTGATGAGTTTTCTTTCAGCTTTGCACTGAGCTGGATATGAACATGATCCAGCCCACAATCTAGAACAGATCAGGGCAAGATGGATATTGTAGTCGTGGGCAGAGAGGTTCAGACAGCAGCTCTCAGCTCTGGGAGCTGCTGGACCTCAGGGTGGAACAGGCAAGTGTCTTTCATTAACCTCTACTGCCACATGTCCTCTATAAGACTTAGAAGGGCTATGCATAGCACCTTTTCCACTGTTGATCTAAACTCTCACCTGTACGCAGAGCTAATTTTATGGAGGATAGAGGGATCCTCCTGTCCTTTTACTGTACACCGCTATTTTCTTTCTACCTGGGCACCAGGCCTTCCCAGGCTGGCTGGGTCTGCGTTCTCATTCTCAGAGAAAATTGGGCTGCTTTAGGAACTGGAGAAGGGAGGAGTACTTCATCTACACATCCACGAGCACAAATGTCTACACATAGCATGCATATGCACACACAACACTCATGCGTCAGAGGTATCCTAACTTCAAATTCTTTTTCCTTCTTGAGTTACGTTGTATAGGAGAGATTTTCAGTCCCAAAGGTGAGAGCTGTGATCTGAGGATGGCCACCTGCTTTTAATTGACTTGTTCTGGGGGAAGGCCTACAGGTGTGCATGGTTCGCTGTTCTGACGCTCTTTTTCCTTTGTCCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GATCTGAGGATGGCCACCTG
59.89
GACCAGGTCTGCTTTCCCTG
60.32
147
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GATCTGAGGATGGCCACCTG
59.89
GGTCTGCTTTCCCTGGGAAG
60.32
142
PCR template sequence:
GTGATCTGAGGATGGCCACCTGCTTTTAATTGACTTGTTCTGGGGGAAGGCCTACAGGTGTGCATGGTTCGCTGTTCTGACGCTCTTTTTCCTTTGTCCAGTAAGTGATGCCTTGACAGACGGGCTTCCCAGGGAAAGCAGACCTGGTCCTAGAACCCAACAACTACCTAGATCCAGGTAGCTCACAGTGATGAGTTTTC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
15
Interacting miRNAs (#binding sites)
mmu-miR-19b-3p(1), mmu-miR-130a-3p(1), mmu-miR-19a-3p(1), mmu-miR-152-3p(1), mmu-miR-101b-3p(1), mmu-miR-196a-5p(1), mmu-miR-351-5p(1), mmu-miR-130b-3p(1), mmu-miR-721(1), mmu-miR-511-3p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-673-5p(1), mmu-miR-669d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTCCTTTGTCCAGTAAGTGATGCCT
siRNA sets
ATCACTTACTGGACAAAGG,TCACTTACTGGACAAAGGA,CATCACTTACTGGACAAAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.725177685
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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