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mmu_ciMtmr6_787
Basic information of circular RNA
PanCircBase ID:
mmu_ciMtmr6_787
mm39_Chr. Position ID:
chr14|60529575|60530362|+
Gene name:
Mtmr6
Transcript:
ENSMUST00000022563.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
7
Exon/intron offsets:
0
Genomic length:
787
Exon/intron sizes in nt:
787
Flanking exon/introns:
chr14:60529575-60530366
Splice length:
787
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATGATTATTGTACACCTTTTAGAGAGCTTTGTGCAATGGAGGTACAGTGACAGTCACATAGGGCTTTAACTGTTCTGTCACTCACACTCAGAGTAAAAAGAATGTGGAATTGACATTAATGTGACATACTAAAAGTATTACTTTTAGCATGTAGTCAGTACTAAAACCAATAGAACAGTCCCCCCACCTCTTCCCATCCTTCCTTCCCTCTCCTCTCTCTTTCCATCCCCTCTCCCCCTCTTACTAAGGTGCTTACTCATACCTTTTTTGAGACAGAGTATCACCGAAGGTATCCTCAAACTTCCTCTGCCACCAAGGCTTGCCTTTAATTACTGCTCCTCTTGCTTCAGCTTCTCAGGTGCAGGGATTACAGTGTGCGCAAGCATAGCAGCGAGATCTTCTATTGTCATCCAATCATTCTTTATTCTTACATCTCACTTCAGCAGAGGCACATTGCGGGGGGGGGGGGGGGGCAGATGTCCTGTCTGCAGTTCTAATGGTCACTGTTGGTAGAGATCATTGAGTGGTCTCTGCACTCTTCATGATGTCATTCATATGTGTGTATGTATATAGCAAGAGAATTTAAACATCTGTGCTACCTTTTACAAAGGCAGATGAACATTTATTTTAAGCCTAAGGAATGACAGGAGCTTTATTCAGCTTCTCGTAGCACATTTAATTGATACGCATTTTCCCCAGTTCACTCCCCAAGATCATTGCAAGACAGATGTGGGAAGGAAGAGTGGGCACTCCAGCCGCCTTCTAATTGAAACCTTCTCTATTTC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTTTCCCCAGTTCACTCCCC
59.52
ACCTCCATTGCACAAAGCTCT
60.2
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TTTTCCCCAGTTCACTCCCC
59.52
ACCTCCATTGCACAAAGCTC
58.75
141
PCR template sequence:
CGCATTTTCCCCAGTTCACTCCCCAAGATCATTGCAAGACAGATGTGGGAAGGAAGAGTGGGCACTCCAGCCGCCTTCTAATTGAAACCTTCTCTATTTCGTATGATTATTGTACACCTTTTAGAGAGCTTTGTGCAATGGAGGTACAGTGACAGTCACATAGGGCTTTAACTGTTCTGTCACTCACACTCAGAGTAAAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-298-5p(1), mmu-miR-363-3p(1), mmu-miR-466d-3p(1), mmu-miR-466b-3p(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CCTTCTCTATTTCGTATGATTATTGT
siRNA sets
AATAATCATACGAAATAGA, ATAATCATACGAAATAGAG, TAATCATACGAAATAGAGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.901633438
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
Institute of Life sciences, Bhubaneswar, India
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