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mmu_ciMterf3_1822
Basic information of circular RNA
PanCircBase ID:
mmu_ciMterf3_1822
mm39_Chr. Position ID:
chr13|67062854|67064676|-
Gene name:
Mterf3
Transcript:
ENSMUST00000173891.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
1822
Exon/intron sizes in nt:
1822
Flanking exon/introns:
chr13:67062852-67064676
Splice length:
1822
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAATATATCTTGATTACTATACTTGATTAAGGTTTTTTTGTTTTTTTGTTTTTGTTTTTTAAGAATAAATACTGCTGTTGTCATCATGCAAAAAACAAAACTTTTAGCAGAACTTTTCAGCAGAAATGTGTCTTGTGTTTCTGTGAAAGAAACCTGTGTATTAAGGAGGCAAAGTTTCTTGCTCAAGTTGTCACATACTCTTAATAGCTAAAGTAACATTTATTAGAGTCTTTGTAGAAACTTCATAAAACACCAAAAATGTTAGCAGAAATTATTTCTAAAAGTCAGAAATGACAGTTTATTTCAGCCAGTGTTTTTGCACATTCTACCTATTCTACGTAAATCAGTTACCTGCAGACATTAGGACCCATGATCCTGAAGCAGTAAGGAATAAATGGGACCTGGATACTGCTTTTTTGTTGCCTAGTTTGATAAGCAATGTCTATGCTTCCTGGCCATGTTCCCATTCTGTGAAAACATTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTGTGTAGCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACATCCGGCCTCTGTGAAAACATTTTGACTATCCTATAGTGGTTCTGATTTAGCTTTTTTGCAAACTCCACAATGGCTTTCCTTACTTAACTACAACTACTCGGTCCATAATTTGAGCAGCTTCTCTTACTGACCAAGGCTAATAATCACTATGTTTACTACTTTCCAGTTAGGCCTGTATCCCAATTTCACTGGAACTGTGGGAAGCAGTCACAGCATTGAGTCACAGCATTGTTCAGGCAGTCGCCCTGTCATCACACATTCCAAATCATCCCCTAAGCTTTAATAAGCTAGCTGGAGAGATGCAGCAGGTGCCAGGCATACCACTGGACCTTCAGTTTTCAGGCTTTATACAGCAGTGAATGGGAGATGGGTCTCCAGAGGCCAGCTTGTTCCTGGAAGCCAAGGAGAGGGTTACTTTTCCTTGTGTGTTTCACAGTGTAGGCCTCCTACGACTTGTACTTTGTACCTTCTACCTTCCACTCCTCCTGAGATTACTGTAGATTAGTTTTAAGCCCACAGTCTCATAGTTGTCACCCAAATTTCAGGCAACTGGAGCTCAGATTCAAACAATGTATTATTTCTCAAGATGGCACAGAGTCTCTGTATACCACAGTGCAGATGGACAAAATGGGATTCCTGTCCACCACTGGCCCAGGAATCACTGTCTCACAAAAACCTTCAGTGGTTTTGAAGATTCTGTAGTCTGTCGATATATCTTGAGGATTGGAGTCTGCCTGTCTTGATAGTTGTTAATTTCTGAAGGTCTTCCTATTGGTCTCTGCAAAGAAGTCAAGAGTATTTTTTTCTTGTTCTGACCCTTATCCATAAGGTCCCATGGGAGCTTTTAGTCCAGCATCTTGTCTGGAAATCCAGCACTGATTGGCTTGTGCCAGTCTATACAGGCCTCCTTTCTCCATATTTTATTCCATCTCAGGATGTTTTGTTTGTTTTGATTTGTTTTGTTTTGTTTTCCTGTGAGCCTCATGACAATCAATACAGAGACACTCTTGCGTGGATAAGGGGTTTGAAATTTGAGTGACTTCGACCAGTGTGAGCCATAATCCTTCCATGGGTACTGGTATAAATGTGCCCAAATTTTAAAAGGTCATTACTTTAAAATTTGGAAGGATCAATTTGCCCTCTAGAATAGTACCAAAGGCCATTTCTACTCATGACTCCCAGGAAATTTACTTTTTTGT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGAAGGATCAATTTGCCCTCT
59.69
TGCATGATGACAACAGCAGT
58.1
169
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TGGAAGGATCAATTTGCCCTCT
59.69
TTGCATGATGACAACAGCAGT
58.77
170
PCR template sequence:
AAAAGGTCATTACTTTAAAATTTGGAAGGATCAATTTGCCCTCTAGAATAGTACCAAAGGCCATTTCTACTCATGACTCCCAGGAAATTTACTTTTTTGTGTAATATATCTTGATTACTATACTTGATTAAGGTTTTTTTGTTTTTTTGTTTTTGTTTTTTAAGAATAAATACTGCTGTTGTCATCATGCAAAAAACAAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
26
Interacting miRNAs (#binding sites)
mmu-miR-9-5p(1), mmu-miR-140-5p(1), mmu-miR-134-5p(1), mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-7b-5p(1), mmu-let-7e-5p(1), mmu-miR-31-5p(1), mmu-miR-146a-5p(1), mmu-miR-298-5p(1), mmu-miR-709(1), mmu-miR-339-5p(1), mmu-miR-181b-5p(1), mmu-miR-381-3p(1), mmu-miR-495-3p(1), mmu-let-7d-5p(1), mmu-miR-26b-5p(1), mmu-miR-494-3p(1), mmu-miR-340-5p(1), mmu-miR-224-5p(1), mmu-miR-680(1), mmu-miR-690(1), mmu-miR-369-3p(1), mmu-miR-539-5p(1), mmu-miR-146b-5p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTACTTTTTTGTGTAATATATCTTG
siRNA sets
ATATATTACACAAAAAAGT, TATATTACACAAAAAAGTA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.894695409
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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