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mmu_ciMtch1_983
Basic information of circular RNA
PanCircBase ID:
mmu_ciMtch1_983
mm39_Chr. Position ID:
chr17|29557781|29558764|-
Gene name:
Mtch1
Transcript:
ENSMUST00000095427.12
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
6
Exon/intron offsets:
0
Genomic length:
983
Exon/intron sizes in nt:
983
Flanking exon/introns:
chr17:29557775-29558764
Splice length:
983
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAGGTGATACCTTGGTGTCTCTGTCCCTCCTCTTGCTAGGGATAGCACCACTGCTGCCTTTTGCCCCTCCCTCATTTGAGTCTCCAAAGGAGCCTTGGCTCCTGGAAGAGGCCGGTGCGGAGCCTCGATGCCCTCCAGTGCTGCTGGAGTCTGCCCAGGTCAGCTGTGAGCTGGAGTCGCCTCCCAGACATCTAGGGTTCTCTGTCTTCCAAAATCTGTTCCTCTCGTCCTGTACTGAGAGGATGCCTTCCCCTCATGTGCCCAGCGCTCAGTGCATCCGGGAGGCCTGTGGCCCAAGCACACAGCCTTTTCCTCTGCTATTTCCTGGCTTTGGTTGTTTTCTGCACAGTTGCTTGATTCCCCAGACTGAAATAGGAGGCTGGTAAATGACCGGAGGGGACAGCTTGGCTGAAACCCCAGTGGGTCAGGCTGCCGTTGTGAGAAGAACACAGGGTGTGGTGGGGGTTGGAGCCCGGGACCAGCTCTAGTTAGCCTGGCTTCTGTGCCTGGTGCTTCCACCTGGCCAGTACAATAACTCTGGGGGCCAGCTACTGTTTCCAGTCACAGGTCACAGAGCGGGGGGTATGGGACAGGAAGCCACAGCCTGCTCTCTTCATCTCCAGCAGGCTGCCCTGCAGGGCTCCAGACCCCAGCTTGCTGGGTGAGAGGGCTGGAGGGGTTTTTCCTGGGTTAATCCAAGGTCCTCTGCTGCCCTGTGCGGGTGCTTCCTTCTGTCCTCCCCTTCCTGGCCTCACTGGCCTCAGGTCCTCTGCACAGAGCTTGCTTGGCTCATGAGATGCAGGCGTGGGAATCTGAGGTCCTAGATCAGGACGACCAGTGGTGTGAACTCACCCCACCCCAAAAGCTCTTTTTTTCTCCCCATGGGGTCTTCTTGGGAACAGACTCCCCTCCCGGTTAGCACCAGCTGATCTGAGTAAGGTTGAGTGGTGGCCTATGCTGAGTGACCTTCTCCATCTTGCCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGGGGTCTTCTTGGGAACAG
59.23
AATGAGGGAGGGGCAAAAGG
59.96
177
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAGACTCCCCTCCCGGTTA
60
AATGAGGGAGGGGCAAAAGG
59.96
160
PCR template sequence:
TGGGGTCTTCTTGGGAACAGACTCCCCTCCCGGTTAGCACCAGCTGATCTGAGTAAGGTTGAGTGGTGGCCTATGCTGAGTGACCTTCTCCATCTTGCCTGTAGGTGATACCTTGGTGTCTCTGTCCCTCCTCTTGCTAGGGATAGCACCACTGCTGCCTTTTGCCCCTCCCTCATTTGAGTCTCCAAAGGAGCCTTGGC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-miR-134-5p(1), mmu-miR-15a-5p(1), mmu-miR-31-5p(1), mmu-miR-15b-5p(1), mmu-miR-298-5p(1), mmu-miR-143-3p(1), mmu-miR-138-5p(1), mmu-miR-218-5p(1), mmu-miR-370-3p(1), mmu-miR-673-5p(1)
siRNAs for circular RNA silencing
Junction sequence
CTCCATCTTGCCTGTAGGTGATACCT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.659601509
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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