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mmu_ciMrpl37_1635
Basic information of circular RNA
PanCircBase ID:
mmu_ciMrpl37_1635
mm39_Chr. Position ID:
chr4|106922011|106923646|-
Gene name:
Mrpl37
Transcript:
ENSMUST00000030365.6
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
1
Exon/intron offsets:
0
Genomic length:
1635
Exon/intron sizes in nt:
1635
Flanking exon/introns:
chr4:106921967-106923646
Splice length:
1635
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGGTCTCAGGACAAACGGGAGGAGACGCTGTCCCAGGCTCAGCAGTGACCCCGAGCCTGGGGAAGTTTCTTCCTCTGGAAGTAGAATAGAGTAACACCCGGCTTCCAAGAGTTGTCAGATCAAGGTGTTTGTGAAAGGGAGCAATGGAGAATGTGTGCAGAGAGGAGGGGATTTGTCTCCATGCGTGGAGAGGTGATAATAAAGCAGGTCTACAACGCTCCTTTTCTGGGGGTGTCTTTTGTTAAAATAGGCCTGGGATATGTTTTCAAAGAAAGGATTTGCACCCAAAAGTCTACCCACTTAATAACAGGTCAGAATGTCTTGAGCCTTTTCCTGAGTTGGAGGCCAGCCTAATCTACAGAGTGAATGAGTTCGAAGACAGTCAGGGCTACACAGAGAAACCCTGTGGGGAGGCGGGGGAGATACATCAATGTCTCAAAGTCATTCTGTTTCTTAAGAGGAGTGTCAGGAACTGTTTTCCAGAGTTGAACCCTCTCAGGATCAGGATGAGGATAGGGAAGATCCTAAAACCAAAAACAACTGAAGTCTGTGGGAGCAGAGATTCCAAAGGATAACTAGGAAATACAGAGACCCAACAAGGTTTGGAGCCAAATTAAGAGAATCAGTCATAAGTTTGGAAAAATCGATAGCCATAGGCCAGCCTCCTAAAAGGCCCACTTCTATGCCTGCAAGCTGATATTTTTGGCCATTAACCATTTTCTGTGAACTCAGGAGGTGCTGTGAAGGATCTCACAGACACGACCCCTTTGCATTACCCTGACAACGAATGCCTAGTGGATGGATGTGTTTCAGAAGTTAGGATTGCACCTGGAGATGGTGGTGCATGCCTTTAATCCCAGCCCTCAGGAGGCAGAAGCAGGAAGATCTCTGTGAGTTCAAGTCAGCCTGGTCTACTGAGTGAGTTCCAGGATAGCCAGGGCTACACAGAGAAACCGTGCTTTAGGAAAAAAGATCAGAAGTTAAGATTGCATTCATTGAACCAGTCTGAAAATGTATTTTCTATCCTACACTTTCTCAATGTACAGAGAGGTCTTATAAAATCCCAATAAACCCTTGTGAGATATGGCCCTGAGAAGCAGACTGGGGTTATAGAGAGACTGTGGACTTTATGGTAGACAGTCTCAGGTTCTCCTCTTACCTGTATTACCTTAAAGATAGGCAACTTGAAGCAAACTCAGTCTGTCCAAGTTTCCCCCTTCATGTCAGAATCCCATCTAACTTGTAGGTAAGTTCATGGCACAGGAGGTGACATTCAGTAAATGGCAGCTCTAAATACTTTATATTTTGTTAGGTGCTAGAGAGCCATAAAACATGGCTTGAGATTGCTAGCAGAAAAACATCACAGAGCTGGGATTTTATTTGAAGGGCTGGTATCCACTGAACTAGTCTCACAGCTTTGATTTCTCTGTGGGGAGTCAGCAGGGAACTCAGCTGTCTTGAGCATGGTTTGAACTCCTCCTGTTTTTAAGCACTCATTCCCCGTATTCTGCTCTTACCACCTGGAAGTTTCGGTTTTCAGATATCTCAAAAACAAAACCAGAGTCCCTTGAGGCAGCCTTTTCTCTGGTGCTCCCTGACAGGCATAAACATCTCTTCCTGAGCCCTCCCCTC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCCCTTGAGGCAGCCTTTTC
60.25
AAGAAACTTCCCCAGGCTCG
59.96
143
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCCTTGAGGCAGCCTTTTCT
60.25
AAGAAACTTCCCCAGGCTCG
59.96
142
PCR template sequence:
GTTTTCAGATATCTCAAAAACAAAACCAGAGTCCCTTGAGGCAGCCTTTTCTCTGGTGCTCCCTGACAGGCATAAACATCTCTTCCTGAGCCCTCCCCTCGTGAGGTCTCAGGACAAACGGGAGGAGACGCTGTCCCAGGCTCAGCAGTGACCCCGAGCCTGGGGAAGTTTCTTCCTCTGGAAGTAGAATAGAGTAACAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
14
Interacting miRNAs (#binding sites)
mmu-miR-19b-3p(1), mmu-miR-211-5p(1), mmu-miR-19a-3p(1), mmu-miR-22-3p(1), mmu-miR-541-5p(1), mmu-miR-340-5p(1), mmu-miR-325-3p(1), mmu-miR-384-3p(1), mmu-miR-673-5p(1), mmu-miR-3087-3p(1), mmu-miR-452-3p(1), mmu-miR-3470b(1), mmu-miR-697(1), mmu-miR-3061-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GAGCCCTCCCCTCGTGAGGTCTCAGG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.698239893
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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