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mmu_ciMpzl1_832
Basic information of circular RNA
PanCircBase ID:
mmu_ciMpzl1_832
mm39_Chr. Position ID:
chr1|165432345|165433177|-
Gene name:
Mpzl1
Transcript:
ENSMUST00000068705.13
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
832
Exon/intron sizes in nt:
832
Flanking exon/introns:
chr1:165432311-165433177
Splice length:
832
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAACTTCCCACAGTGCCTGATGGGTGGACGGATGGATGGATGGACAGTGGCTGATGTGATGGATGGATGGATGGATGGATGGATGGTCTGCTTTGTTTGGTTAGCTGGAGAATAAAATTTGTGTTTCAGGGTACATTTGGAAGGAAGTTTTTTGTTTTTTTTTTTTTTTTAATTTTCATGGATGTTTCAAACTCCAGCCTTACAAATGCTAGCCACATCCGCAAGTCCTGCAGGGAAGGTTTTGCCCTTCCAGCTATGCCTCCCATCTCTGGACACTCGGGGCTCAGCCTGGCGGAGCTGCTGCTTGGGAACTGCTCAGTCAGTACACAGCAGGTGGCTTCCTTTCCCACACACCTCTATCTGGAGCCTGTGACTGACTTTAGATGTATTAGTGTTCAGTGTTAAGACCAAGAAAGACCTGATTTGCTCAGGCTAGATGAGGTGGGCTGTGGGGGAAGGAGATTAGGGTTATTTTGATACTGTTTGAGGTGATATTCAGTGTCTTTCATAGCAATACAGAGTTTTCTTCTCTTGTTTGAAAGTGTGCGGGGAATGCAGGCTTCAGTGTCTCCCCTTACGGCAGTTTTTAGCCAGAGTCACTTGGGAGCATCTCCAGATTTCCTTGTGACTACAGAATTTGGAGTGGGGTTGTGAGTATAGAAGTGCCTGGCTCTCTGGGTCATTTTCAGTTGATGTGCCAGGAGAATGCCAGCTGTGGGTCATCATTAGATGCTGCTCTGTGGAATTTGGCTAATAAGAGAGGATAAATAACTGCCACAGGGAGGCTCTTGCTCATTAAACTACTGAAATCCCATTTCTTCTCTCTGTGGT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCTGCTCTGTGGAATTTGGC
60.11
GTCCATCCATCCATCCGTCC
59.96
146
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCTGCTCTGTGGAATTTGGC
60.11
GCCACTGTCCATCCATCCAT
59.82
152
PCR template sequence:
GCTGCTCTGTGGAATTTGGCTAATAAGAGAGGATAAATAACTGCCACAGGGAGGCTCTTGCTCATTAAACTACTGAAATCCCATTTCTTCTCTCTGTGGTGTAACTTCCCACAGTGCCTGATGGGTGGACGGATGGATGGATGGACAGTGGCTGATGTGATGGATGGATGGATGGATGGATGGATGGTCTGCTTTGTTTG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
9
Interacting miRNAs (#binding sites)
mmu-miR-137-3p(1), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-141-3p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-125b-5p(1), mmu-miR-494-3p(1), mmu-miR-202-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTCTCTCTGTGGTGTAACTTCCCACA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.784124325
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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