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mmu_ciMpzl1_831

Basic information of circular RNA
PanCircBase ID:

mmu_ciMpzl1_831

mm39_Chr. Position ID:

chr1|165432346|165433177|-

Gene name:

Mpzl1

Transcript:

ENSMUST00000068705.13

CircRNA type:

Circular intronic (ci)RNA

Exon/Intron count:

1

Exon/intron indexes:

3

Exon/intron offsets:

0

Genomic length:

831

Exon/intron sizes in nt:

831

Flanking exon/introns:

chr1:165432311-165433177

Splice length:

831

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

GTAACTTCCCACAGTGCCTGATGGGTGGACGGATGGATGGATGGACAGTGGCTGATGTGATGGATGGATGGATGGATGGATGGATGGTCTGCTTTGTTTGGTTAGCTGGAGAATAAAATTTGTGTTTCAGGGTACATTTGGAAGGAAGTTTTTTGTTTTTTTTTTTTTTTTAATTTTCATGGATGTTTCAAACTCCAGCCTTACAAATGCTAGCCACATCCGCAAGTCCTGCAGGGAAGGTTTTGCCCTTCCAGCTATGCCTCCCATCTCTGGACACTCGGGGCTCAGCCTGGCGGAGCTGCTGCTTGGGAACTGCTCAGTCAGTACACAGCAGGTGGCTTCCTTTCCCACACACCTCTATCTGGAGCCTGTGACTGACTTTAGATGTATTAGTGTTCAGTGTTAAGACCAAGAAAGACCTGATTTGCTCAGGCTAGATGAGGTGGGCTGTGGGGGAAGGAGATTAGGGTTATTTTGATACTGTTTGAGGTGATATTCAGTGTCTTTCATAGCAATACAGAGTTTTCTTCTCTTGTTTGAAAGTGTGCGGGGAATGCAGGCTTCAGTGTCTCCCCTTACGGCAGTTTTTAGCCAGAGTCACTTGGGAGCATCTCCAGATTTCCTTGTGACTACAGAATTTGGAGTGGGGTTGTGAGTATAGAAGTGCCTGGCTCTCTGGGTCATTTTCAGTTGATGTGCCAGGAGAATGCCAGCTGTGGGTCATCATTAGATGCTGCTCTGTGGAATTTGGCTAATAAGAGAGGATAAATAACTGCCACAGGGAGGCTCTTGCTCATTAAACTACTGAAATCCCATTTCTTCTCTCTGTGG

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

GCTGCTCTGTGGAATTTGGC

60.11

GTCCATCCATCCATCCGTCC

59.96

145

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

GCTGCTCTGTGGAATTTGGC

60.11

GCCACTGTCCATCCATCCAT

59.82

151

PCR template sequence:

TGCTGCTCTGTGGAATTTGGCTAATAAGAGAGGATAAATAACTGCCACAGGGAGGCTCTTGCTCATTAAACTACTGAAATCCCATTTCTTCTCTCTGTGGGTAACTTCCCACAGTGCCTGATGGGTGGACGGATGGATGGATGGACAGTGGCTGATGTGATGGATGGATGGATGGATGGATGGATGGTCTGCTTTGTTTG

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

9

Interacting miRNAs (#binding sites)

mmu-miR-137-3p(1), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-141-3p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-125b-5p(1), mmu-miR-494-3p(1), mmu-miR-202-3p(1)

siRNAs for circular RNA silencing
Junction sequence

CTTCTCTCTGTGGGTAACTTCCCACA

siRNA sets

NA

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

NA

NA

NA

NA

NA

ORF sequence:

NA

Peptide sequence:

NA

IRESfinder result

IRESfinder score

0.784097327

IRES/non IRES

IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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