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mmu_ciMllt10_638
Basic information of circular RNA
PanCircBase ID:
mmu_ciMllt10_638
mm39_Chr. Position ID:
chr2|18211955|18212593|+
Gene name:
Mllt10
Transcript:
ENSMUST00000028076.15
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
20
Exon/intron offsets:
0
Genomic length:
638
Exon/intron sizes in nt:
638
Flanking exon/introns:
chr2:18211955-18212593
Splice length:
638
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGAGGCTTGCTTCAGTACGTTGTTGTGGTTGCCGTTGTTATTATTATTTGGTTTTCTTCATGCAACATGTTATTAGTGTTGTCTTTGTTTTGGGTTAGGATTTTTTAATGTATTTTGTAGATGTTCTCTAAAAAAATTAAGTGCTAGCTACTCATGGATTGCTTGTTTTTTAAATTGATGTAATTCAATTAAAAATAGATTTCAGTATCATATTAAATATATTTTGTTGAAAATGTCGGTCCTGATCTGGGATATCAAACTTAAAATGTTACTTTTCCTTATTACATACATGTATACTAAATTTTGAAAAGGCATTTTTGTGGCGGTCACATGATACTGGCTCCTCACATTTGAACAGCACAATTTTGATATTTCTCTATCAGAGATTTTGATGCAGTAAGGAACAGATGAATACTGTTATTACAAACACATACGTTTGTATCTTTTTAAACTAAATTCCTGACTAAGTTTCTGTTACTTGATGGTCGAGTTTACGTATATAAGGAGAAAGAATAATTTGTACATAATGAAGCCCTGTAGTTCAAATGAATTTGTTAACACCCCAATGAAGAAGCTGCCTTTGACATCCCCCTGAGGAGGTTACAGTAGAAAGTAAGGCTGTGATGGTTTTTCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCCCCCTGAGGAGGTTACAG
59.96
ACCCAAAACAAAGACAACACT
56.39
147
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCCCCTGAGGAGGTTACAGT
60.25
ACCCAAAACAAAGACAACACT
56.39
146
PCR template sequence:
TGTAGTTCAAATGAATTTGTTAACACCCCAATGAAGAAGCTGCCTTTGACATCCCCCTGAGGAGGTTACAGTAGAAAGTAAGGCTGTGATGGTTTTTCAGGTAAGAGGCTTGCTTCAGTACGTTGTTGTGGTTGCCGTTGTTATTATTATTTGGTTTTCTTCATGCAACATGTTATTAGTGTTGTCTTTGTTTTGGGTTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-26a-5p(1), mmu-miR-217-5p(1), mmu-miR-26b-5p(1), mmu-miR-194-5p(1), mmu-miR-539-5p(1), mmu-miR-3065-5p(1)
siRNAs for circular RNA silencing
Junction sequence
GATGGTTTTTCAGGTAAGAGGCTTGC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIMLLT10_638_ORF_1
0.8694
-0.561151953
0.006287812
123
ORF sequence:
ATGGTTTTTCAGGTAAGAGGCTTGCTTCAGTACGTTGTTGTGGTTGCCGTTGTTATTATTATTTGGTTTTCTTCATGCAACATGTTATTAGTGTTGTCTTTGTTTTGGGTTAGGATTTTTTAA
Peptide sequence:
MVFQVRGLLQYVVVVAVVIIIWFSSCNMLLVLSLFWVRIF
IRESfinder result
IRESfinder score
0.910682308
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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