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mmu_ciMier1_672
Basic information of circular RNA
PanCircBase ID:
mmu_ciMier1_672
mm39_Chr. Position ID:
chr4|103005647|103006319|+
Gene name:
Mier1
Transcript:
ENSMUST00000106858.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
10
Exon/intron offsets:
0
Genomic length:
672
Exon/intron sizes in nt:
672
Flanking exon/introns:
chr4:103005647-103006320
Splice length:
672
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTCCGTGAGTAAGGATAACGCCGTGGGTCTCCTCATAAAGGGCATTCCTCAGTGCGGGCGCTCGTCCACCGGGACTCCCTTATTACAGCGCCTACTGACTACTTTTAGTGTGCTTTTTTGGCTCCAGTAAACAGAAACCTTTCTTTGCCTGCATATACTTTTTGTAATGATTTTTAAAAGTGTTTTTTTTTAGATTTTCTTTTGTTTGTTTTCTATTCTCTCTGTGAGAATCCATGACTCTGATCAAGTTGGCCTTTGCATCTCACATAACCATTGTGTATATAGTCAGATTAATACTTCCATGAACCTAACATGAGAATAGTTTTAAAAACCTTTTTTTTCTCAACCTGTTTAAAATATTAGGAATCCAAGATGGCTCCAAAGAATTACAGCTTAAACAAAATATTTTATGTGAAATCAATATGTCAGTTACTGGGTTACTGTGGTCATCAAGTTACATACCCCTATATACACATATATTGTGCATAGCAAGAGGCATATAAAGTTAGAAATTCATTTTTTTCCTCGATGCTCTGTATGTTGCTCTCACTATAATTGGACCAGAAAGCCTGGAAACAAATACATGATTCAGAAAAATGTGCTCTTAAAAACCTGCATCGGCCTGAACTGTTCGTGATCGGTGAGTCTTATGTAAGCGCCTTTCTTTTCCTA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAAACCTGCATCGGCCTGAA
60.54
AGGCGCTGTAATAAGGGAGTC
59.59
158
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAAAACCTGCATCGGCCTGA
60.54
AGGCGCTGTAATAAGGGAGTC
59.59
159
PCR template sequence:
GAAACAAATACATGATTCAGAAAAATGTGCTCTTAAAAACCTGCATCGGCCTGAACTGTTCGTGATCGGTGAGTCTTATGTAAGCGCCTTTCTTTTCCTAGTCCGTGAGTAAGGATAACGCCGTGGGTCTCCTCATAAAGGGCATTCCTCAGTGCGGGCGCTCGTCCACCGGGACTCCCTTATTACAGCGCCTACTGACT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
7
Interacting miRNAs (#binding sites)
mmu-miR-128-3p(1), mmu-miR-411-3p(1), mmu-miR-499-5p(1), mmu-miR-802-5p(1), mmu-miR-1187(1), mmu-miR-300-3p(1), mmu-miR-339-3p(1)
siRNAs for circular RNA silencing
Junction sequence
CTTTCTTTTCCTAGTCCGTGAGTAAG
siRNA sets
TTACTCACGGACTAGGAAA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.864509812
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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