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mmu_ciMed23_554
Basic information of circular RNA
PanCircBase ID:
mmu_ciMed23_554
mm39_Chr. Position ID:
chr10|24758547|24759101|+
Gene name:
Med23
Transcript:
ENSMUST00000092646.13
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
10
Exon/intron offsets:
0
Genomic length:
554
Exon/intron sizes in nt:
554
Flanking exon/introns:
chr10:24758547-24759101
Splice length:
554
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTACTGTACCACGCTGGGAGCCGTGAATCTAGACCCGCACTCTGCTGTTTCCTTTGCTGTAGCTCACCGGGCAAGACAGTTAAGGACGCTCTGACGACCTTTGCAGTACACAGGTTACTCAGCAGTGTATTCTATATGGTTTATATATATATATATATAGTACATTAAGAATGTGTACATTTAAAGGGAGGTATTTTTAAAATTGGTTTGTTTTGCATTGCTTTTTTCCTATAAGGCCAGTTTCAAGTTCCCTTTTGCCAGAGAAACCTACACATGACTTAACCATATTTTTTGACCTTTTGTTGTTGTTGTTTGGTGTATTTTTATAACCCTGATATCCTCAGAGTGGCCGCCTTGCTGACTTTTCCTTTTTTTTTTTTCTTTTTTTTTCCCCTCTCTTTCCTTTTGGCGTGTCGGTGGTTGACGTGTGGGCGGGTTTGTGCTGACTGGGGTTCCTTGAGGCTGGCCTCATAGTCACCGTTTTGTCTCTTCTTTTTTTCTTCCTTTATTTTTGTTCTGTCCTGTCTTGTCCTGCCCATCCTCCAATGCTCTAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTGGCCTCATAGTCACCGTT
59.46
CCTTAACTGTCTTGCCCGGT
59.96
177
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTGGCCTCATAGTCACCGTT
59.46
CGGTGAGCTACAGCAAAGGA
60.04
161
PCR template sequence:
CCTTGAGGCTGGCCTCATAGTCACCGTTTTGTCTCTTCTTTTTTTCTTCCTTTATTTTTGTTCTGTCCTGTCTTGTCCTGCCCATCCTCCAATGCTCTAGGTACTGTACCACGCTGGGAGCCGTGAATCTAGACCCGCACTCTGCTGTTTCCTTTGCTGTAGCTCACCGGGCAAGACAGTTAAGGACGCTCTGACGACCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-3470b(1)
siRNAs for circular RNA silencing
Junction sequence
TCCAATGCTCTAGGTACTGTACCACG
siRNA sets
ACAGTACCTAGAGCATTGG,TACAGTACCTAGAGCATTG,CAGTACCTAGAGCATTGGA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.95482418
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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