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mmu_ciMbnl2_1111
Basic information of circular RNA
PanCircBase ID:
mmu_ciMbnl2_1111
mm39_Chr. Position ID:
chr14|120640783|120641894|+
Gene name:
Mbnl2
Transcript:
ENSMUST00000167459.3
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
8
Exon/intron offsets:
0
Genomic length:
1111
Exon/intron sizes in nt:
1111
Flanking exon/introns:
chr14:120640783-120642049
Splice length:
1111
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAGGTTCCAACCTTTTTTTATTTGTCTTTTATATGATGTGCAATGCCTTCACTGTTTGACATGTATTTCAGAGACAGTAGAGAATGCTTTAGGAAGTAGATCTGAAGGCTTAATAGCTTTAGAGTTAACGTGTAAGCTATGCTTGTGTATTTAAGAGAGTGATGGTTTTAATGTGACCTCTTAATGCTAGAACGATCACCACAGAGACGTGAAACCACAAGTGCAAGTGTGCTTTTTAAAAAAAATGATTTGTGTTGTTTCTCTTTATAGTTTATCTGGTTTAGCATGAAGCAAGCAGAGGCAGGCTAATTTCATCAATGTTTTAAAGTTTCATAGTGGTGTGTGCCTTTACCTCCTCTTTGCTGTGTGTTAGAGTTATCAGAGTTTCCCAGAAGTATTTATTTTTGGAAAACAATTATACTTGGATGTGTTTTGAGACCAAGTGCCTGAACTACGCTACTTACTTCTCTTTTTAGAGGGCAGACTTATTTTTAATGGCTTTGGTTTTTTAGTTTTGTTTTTGCTTTGCTTATTTTTGTGCCTCCACGTCCATTCCCTTAGATGGGGAATTTTAACAGTGGGGTCTTCTCTCGAATTCAGGACCTTGGCACACAAGTCTGTCTTCAGGGCAGCTGATTCATTTCACTTACAAATTCAGAAAGTCACCACTGGCAAAAATGGATCTGGTTACTTCGTAGTAACCGCTCTAGAATTTACACCAAAGCCATTTCTCTTGCCTCACCTTTTAGTGACCGAAGTAAAACATGGAGCCACTGAAATTCCACCGTTCAGATATGCTTCCAAATTTAAGAGAAAAATGTTTTTTGGTTTAACCACAATTGATTCCAAAGTTCATCCTATTCTAAATTAGGCCCTCTGAGCCTGTGGCGTTTTGGAATTTATGATCAGTCCACTTGGTTCATTGGGTATTACCTATCATGTATTGAGAAGCAGCTGTAGCTATCTATGGTCATGATGCCATCCTCTGAATTGGGAATAGCTCTGTTTTGATCAAAGCGATGCGCTTTGGGCTCTCTGGGAATCACTGATTGTGTTTGAGAACTTCCTTTAACTGTACTTGTAATAAGCTATTTTCCCTTTTTATTTCTC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCTTTGGGCTCTCTGGGAAT
60.03
AACAGTGAAGGCATTGCACA
58.6
144
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCTTTGGGCTCTCTGGGAAT
60.03
CAGTGAAGGCATTGCACATCA
59.46
142
PCR template sequence:
ATCAAAGCGATGCGCTTTGGGCTCTCTGGGAATCACTGATTGTGTTTGAGAACTTCCTTTAACTGTACTTGTAATAAGCTATTTTCCCTTTTTATTTCTCGTAGGTTCCAACCTTTTTTTATTTGTCTTTTATATGATGTGCAATGCCTTCACTGTTTGACATGTATTTCAGAGACAGTAGAGAATGCTTTAGGAAGTAG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
10
Interacting miRNAs (#binding sites)
mmu-miR-32-5p(1), mmu-miR-31-5p(1), mmu-miR-149-5p(1), mmu-miR-22-3p(1), mmu-miR-340-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-129-5p(1), mmu-miR-539-5p(1), mmu-miR-669d-5p(1), mmu-miR-484(1)
siRNAs for circular RNA silencing
Junction sequence
CTTTTTATTTCTCGTAGGTTCCAACC
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.938743459
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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