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mmu_ciMapk8ip3_465
Basic information of circular RNA
PanCircBase ID:
mmu_ciMapk8ip3_465
mm39_Chr. Position ID:
chr17|25120786|25121251|-
Gene name:
Mapk8ip3
Transcript:
ENSMUST00000146923.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
20
Exon/intron offsets:
0
Genomic length:
465
Exon/intron sizes in nt:
465
Flanking exon/introns:
chr17:25120761-25121251
Splice length:
465
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGCCGGGGCTCCCACTGCCAGGTGCTGTCCAACAGCAGGCACTGCTGCTTGTGGACTGCCCTGCAAAGCTGGTGCTCGAGGCGGGTAGCTCTTCCTTTTCAGCCAGGTAGGACTGACATGTGCAATAAGTAGGGATTGGAGACCTGCTAGGAATGCAAGTCCAGGAGGAAGCTCTTCAGGGTACAGGCAAAGGCCCTGGCTTCACCCCTCAGCAGCAGCCTCATGACCTTTTAGCCCAGCCCCAGGGTAGCGCTAAGAGCCCTACATGTCTCTGCTTTGAAGCCTATTTGCTGGGTGGCCTCTACTCCTTGGAGCTCTTCAGGACCTTTCGTGTGATAGAGCAGAGCATTACTTCTTAGCTTCGTTTTGGCCTATAAGCTTGACCCTAGGCCTGAGCGTCGCAGGCATGGTTGCGTGTGACCTCCCTGCCTTCACTGAGATGGAGCTTTGTGGTGTTGGACT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AAGCTTGACCCTAGGCCTGA
60.55
TTTGCAGGGCAGTCCACAA
60.08
157
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
AAGCTTGACCCTAGGCCTGA
60.55
TTTGCAGGGCAGTCCACAAG
61.11
157
PCR template sequence:
CGTTTTGGCCTATAAGCTTGACCCTAGGCCTGAGCGTCGCAGGCATGGTTGCGTGTGACCTCCCTGCCTTCACTGAGATGGAGCTTTGTGGTGTTGGACTGTGAGCCGGGGCTCCCACTGCCAGGTGCTGTCCAACAGCAGGCACTGCTGCTTGTGGACTGCCCTGCAAAGCTGGTGCTCGAGGCGGGTAGCTCTTCCTT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-32-5p(1), mmu-miR-92a-3p(1), mmu-miR-322-5p(1), mmu-miR-29b-3p(1), mmu-miR-29c-3p(1), mmu-miR-25-3p(1), mmu-miR-351-5p(1), mmu-miR-363-3p(1), mmu-miR-127-5p(1), mmu-miR-370-3p(1), mmu-miR-384-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GTGGTGTTGGACTGTGAGCCGGGGCT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.578530074
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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