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mmu_ciMapk8ip3_42
Basic information of circular RNA
PanCircBase ID:
mmu_ciMapk8ip3_42
mm39_Chr. Position ID:
chr17|25117802|25117844|-
Gene name:
Mapk8ip3
Transcript:
ENSMUST00000146923.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
32
Exon/intron offsets:
0
Genomic length:
42
Exon/intron sizes in nt:
42
Flanking exon/introns:
chr17:25116293-25117844
Splice length:
42
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTTCGTCCATCCCCTTTTAACCTCTCAACTTGCAGCTTTTGC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
PCR template sequence:
CTCTCAACTTGCAGCTTTTGCGTTCGTCCATCCCCTTTTAAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
1
Interacting miRNAs (#binding sites)
mmu-miR-320-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTGCAGCTTTTGCGTTCGTCCATCCC
siRNA sets
ATGGACGAACGCAAAAGCT, GATGGACGAACGCAAAAGC, GGACGAACGCAAAAGCTGC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.965936048
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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