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mmu_ciMagi1_2979
Basic information of circular RNA
PanCircBase ID:
mmu_ciMagi1_2979
mm39_Chr. Position ID:
chr6|93671195|93674174|-
Gene name:
Magi1
Transcript:
ENSMUST00000055224.15
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
16
Exon/intron offsets:
0
Genomic length:
2979
Exon/intron sizes in nt:
2979
Flanking exon/introns:
chr6:93663856-93674174
Splice length:
2979
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGAGTGCTAGAAAGGGCCCAGGATGGAGTCCCAGTTTAGGATGTTTACTGCCTTGACAGTGGCTCTGAGCTTAGCTCTCAGCAGAAATGCCTGAATGCTTTTTTGCTTCATATATTAAAGTCTTAGTTGGAGATGAAGTTTATTTGGTAGGTTTTGTTGGGTCCCCTTCCCCACTGCCTGCTTTTAGCTTTCTTTCTAAATGTGTGGTCATGCACAGCTTCAAGTACACAGGAGATTTATGTCAGATTTGAATAGCTGCCCCTGGGTAGTATAAAGGATTATACAATGTTTGCTAGCGGAAGACTTGAGAAAGTTCCTAAGTAGAAGATATTAATAACAATGGCCTCAGAAAGTCCTAAGGATTTCTAAAAGCAGCAGATGTTGGTAAGAATGCCTAGGAAAAGTAGAGGTGTAAGAAGTAAGAAAATGACCTGTGAATCTCCCCCCACCTCATATGGCCTTTCTCTGTCCCAACCTGAATGCTGCCTGAAGTTTTAAATGGCCCTTTATTGTTGCTTTAGAATCTAGCCCAACGCAGAGTCATTTGATTTGGGGTCTTATTCAGGTCTTGGGTTTTACTGACTATGGATAATGTTTTGTAATCTTCTCCAAATATTAACCTCTCCTGGGTGGATTCACAAAGGCAAACAGGAAACCAGTTGAATCTCTGAGTCTCCTCCTGTTGCAGTGGGTGTGCCCCTCCTTCCCGAATCCTTTCTGATTCAGTCCTTTGTCATCTCCAGAGCACACTGGAAAGTGATAGGAGACAGGAAAAGTAATGATACAGGCTTCAGTTTTCTCTCAAATGGCTCAACCCCATAGGTCCTTGTGGCCAGAGGCAACTCATTGAAGTCAAGAAGGGGCTACATCCTTTTAACATTCTGAGCCAATAGAACCCACTCTGTCTCCAGTTAGTCTTGATAAGTTGCTTCTTGCTAAAGGGGACACTCAGCCTGGTCTGCCCATGTGTGAGTGCAGTAACCACCCATTACTAACATGCTCCTCTGTGCGCTGCGAAGATCAAGTCATCACAGCATGGCCCAACGCATGATCCACCATCAAGGCACTGGTTTTTCATTTTGTTTTATTTTGCTTTGCTTTTTAAATTACCCCCAAAGAGTTTTCTGCCGACTTTAAAGATAACCAGAAACGGGGAAGGGAATCCCAAGTTGTTTTCCACCCCAAATCTCCAGTGTACCCCAGAGCACACTGAGCTTTACCGTAGTTCTTGTTTTCAGGCTCCAGCAAGAAAACGCAGGTATGTCAGGTGACAGGCTCTGTCAGTCAGGTGACAGGCTCTGTCAGTGTGGATGAAGAGTATTGAACGTTTTCACTCACGGTTGGATCTTTTGATTATTTTCCTTGGGTTCTTACAATCAACAAATTGAACTTTTCCCTAACACCTTTCGCGAGACTGCTGAGCTATGCAGAGCCTTTCTTCATGCCTGCTGTTTGAGATCCTTGTCCTGCAGGTTGGCCTTAGAGCCGAGCTGCATTTACTCTGGACCTTGGTCCCATGTGGACCCCTTCTGCTGCACCTCCTGCCTGCATTCACGACAGCTCACTTGGCTTTTTAAAATTCTTTGAGTTTGGCATTCCACTTAGTGACACAGACTCAGTCAACTCCTCCCTCCATTCAGATTTGAAGGAGTCAGTGTGTTTTTCAGATAGTTTCCCCTTCAGGTCAGAATTATAGTGAAGGTGTCTGCACAGTTGACTCTGTTGTTTCCCCCTCCCAACCCCCCCCCATATTAATTTTGTTACCATTTCCAAAAGGTGGCCCAACAGTGTCGCTGTTTTGATAATTCTGAGAAGACAAATTCTAAAAGTCTGCATAAAAACCATTGGAACTCAGCCAGGTGGTGGTGGCACAGCCCTTAGGAGGCAGAGGCAGGCTGATTTCTCTTGAGTTAGAGGCCAGCCTGGTCTACAGAGCTAGTTCCAGGACAGGCAGGTTCAACACTAAAGCCCTGTGTCAAAAGCAAACAAACAAAAAAGGCACACATTGGAACTCAACACACAAGCACCTGCTTATACCAGAGCACCCCTCAAAGACAGCTTGCCCTGCAGAGTGGCTCAAGCAAGCAATAAACCTGCAGATCCCTTCCACCCTGTTTCCTATCCTATTATGTCTGCCTGTAAGTCTGTGAGTCAACACAGATGATTAAAGGAAGAGAGCAAGGGAATGACTTGAGACAAGCTTTGCTTTGCTGTCCTCAGCCTGAGTAGGTGCTAGATTTTCACTATGTCCCTTTAAGGGCATTTGCTTGTGAGGCAGGAAGAGGCTCCAGGCTAATGAGCCCACCAGGGCCTCCCTGAGAGCTCCTGACTGGGCTGAGTGAACATGGATCCCTAAGCGTCTGTCTGGGTGCTCTCCTGGCTTATCTCTTACAATTATGCCTTTCCTAAAGCTTCCATCAGCGTACATAGAGCAAAGGTGTCGCTCCACTCTGTGTTTTCACATTGAACTTTTAATGCTAGCCGACTCTTAACCTCCCCAGAAGCCCAGTGATTATTTTTGTAAATGGAGAAAGAACAAAACATTGGCAGAAGCGTTAATAACAGTTGGCAAAATGAAGTGGCAGGAAGACAGAATGGATAAAAGCATCCACCCCAGCTCTGGGGTTTATATGTACAGCCCCAAAATAAACCAACGGCCACCAAGTTATTTTGGGGTTTCAAGACTCAAGTTGCCAAATACCCCAAATTCTAATTGTTTTAAGGAGAGAAGCTGGGGTTTTGCCATCATTTTAAAGTAAAAAGGACTGTGACGTTGAACTGTAGACTCGGAGCTGTGGCTTTTTAGACACCCTGAGTATTGCCAATGTTTTGACCATCAGCACAACGCTCTCCTTTAATAACATTTGCTTGATGCTTTAATTAATTAACACTTAACCTTCTCTTTCCCTTTTCAACCCTTTTCTCCTCCCTTCACTATATTCCCACATAACTTAAAAAAAAAATAAAACTCAATACCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACCCTTTTCTCCTCCCTTCAC
59.29
GCTAAGCTCAGAGCCACTGT
59.75
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACCCTTTTCTCCTCCCTTCAC
59.29
AGCTAAGCTCAGAGCCACTG
59.46
141
PCR template sequence:
AATTAATTAACACTTAACCTTCTCTTTCCCTTTTCAACCCTTTTCTCCTCCCTTCACTATATTCCCACATAACTTAAAAAAAAAATAAAACTCAATACCAGTGAGTGCTAGAAAGGGCCCAGGATGGAGTCCCAGTTTAGGATGTTTACTGCCTTGACAGTGGCTCTGAGCTTAGCTCTCAGCAGAAATGCCTGAATGCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
28
Interacting miRNAs (#binding sites)
mmu-miR-3470b(2), mmu-miR-1a-3p(1), mmu-miR-30e-5p(1), mmu-miR-30a-5p(1), mmu-miR-30c-5p(1), mmu-miR-143-3p(1), mmu-miR-139-5p(1), mmu-miR-30d-5p(1), mmu-miR-214-3p(1), mmu-miR-30b-5p(1), mmu-miR-136-5p(1), mmu-miR-153-3p(1), mmu-miR-29b-1-5p(1), mmu-miR-127-5p(1), mmu-miR-342-5p(1), mmu-miR-499-5p(1), mmu-miR-384-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-377-3p(1), mmu-miR-1187(1), mmu-miR-5101(1), mmu-miR-539-5p(1), mmu-miR-669d-5p(1), mmu-miR-3065-5p(1), mmu-miR-1199-5p(1), mmu-miR-697(1), mmu-miR-3105-3p(1), mmu-miR-338-3p(1)
siRNAs for circular RNA silencing
Junction sequence
AAACTCAATACCAGTGAGTGCTAGAA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.802077216
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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