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mmu_ciLrrcc1_670
Basic information of circular RNA
PanCircBase ID:
mmu_ciLrrcc1_670
mm39_Chr. Position ID:
chr3|14601599|14602269|+
Gene name:
Lrrcc1
Transcript:
ENSMUST00000108370.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
670
Exon/intron sizes in nt:
670
Flanking exon/introns:
chr3:14601599-14602269
Splice length:
670
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTCGACTTGTTTATATTTCTATAATGCTGAAAGTTTGCAGGCTATGAGGACTTAGCCCATTGTTGGAAAACTGCAAAGAATAATGATGTTTTGACCAAGTGTTTTATCTAAGTGATGTACTTCTATTAAAACTTTTGTTGCTGCCAAAATATTACCTGAGTAAAACACAGAAATGAAGACGAGTATGATCAGTAGCAAAAAAAAAAAAAAAAAGCTACAGTGAGGAAAACCTACTTTAGGGGGGTCCTGCTTAATCTTCAAAGATTACGCACTCTGCTCACATAGAAAGGGGCAGCTCCAGTAGAATGGCAGATGTGATGGAAACTTTGGTGCCCTCTCACATGTGGCTACCAGTAGCCAGATGTGACTGTTGACTTGAGATTTGACAGTGGTACTGGATATTTAATTAAATATTAATTTCAATATAAAAGCAACTAGTGACTACTACATTACACAATATTGAGATGAATGATCCCAGGGACTTGGATCTTAAAAGTAAAATTGGTTTTTCATATGTTCTACATGTCTAAGAAGATTTTGAAATTATTATGTTTTTTTATTAAGTGATTTACAATTTTTAGAATTACTTGTTAGAAGTAACAGAATTTCACTAATTATCCTCATATGCTGTTTCTTTGCCTTAAAACATTTCTTTTCCTGTTGCAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TCCTCATATGCTGTTTCTTTGCC
59.3
GGTCAAAACATCATTATTCTTTGCAGT
59.4
149
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCTCATATGCTGTTTCTTTGCCT
59.3
GGTCAAAACATCATTATTCTTTGCAGT
59.4
148
PCR template sequence:
ATTTACAATTTTTAGAATTACTTGTTAGAAGTAACAGAATTTCACTAATTATCCTCATATGCTGTTTCTTTGCCTTAAAACATTTCTTTTCCTGTTGCAGGTAAGTCGACTTGTTTATATTTCTATAATGCTGAAAGTTTGCAGGCTATGAGGACTTAGCCCATTGTTGGAAAACTGCAAAGAATAATGATGTTTTGACC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-216a-5p(1), mmu-miR-132-3p(1), mmu-miR-3065-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTCCTGTTGCAGGTAAGTCGACTTG
siRNA sets
AAGTCGACTTACCTGCAAC, AGTCGACTTACCTGCAACA, GTCGACTTACCTGCAACAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CILRRCC1_670_ORF_3
1.1411
-0.50426624
0.010529883
93
ORF sequence:
ATGCTGTTTCTTTGCCTTAAAACATTTCTTTTCCTGTTGCAGGTAAGTCGACTTGTTTATATTTCTATAATGCTGAAAGTTTGCAGGCTATGA
Peptide sequence:
MLFLCLKTFLFLLQVSRLVYISIMLKVCRL
IRESfinder result
IRESfinder score
0.868809711
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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