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mmu_ciLmtk3_191

Basic information of circular RNA
PanCircBase ID:

mmu_ciLmtk3_191

mm39_Chr. Position ID:

chr7|45436008|45436199|+

Gene name:

Lmtk3

Transcript:

ENSMUST00000209617.2

CircRNA type:

Circular intronic (ci)RNA

Exon/Intron count:

1

Exon/intron indexes:

3

Exon/intron offsets:

0

Genomic length:

191

Exon/intron sizes in nt:

191

Flanking exon/introns:

chr7:45436008-45436233

Splice length:

191

Other database IDs:

Human Ortholog IDs:
Mature spliced Sequence:

GTGAGGTGCCCTAGGACTAACCTGGGAGAAAGACCCCAGGCAGCAAAGAGACTGGAGGTCCCAGAGCACTCCCAAGACCTACGGCTTTGGGATGCGCACACTAGCGGAAATTGGGCTGGGATTTGAGGGACAGGTCTGTGGACTGAAGGGAGGCAATTAGGGCAGGATGGCGGCATCTCAGCACCCTCCTC

Divergent primers for circular RNA PCR

Primer Set-1

Forward primer
Tm
Reverse primer
Tm
Product size

ATTGGGCTGGGATTTGAGGG

60.03

TCCAGTCTCTTTGCTGCCTG

59.96

138

Primer Set-2

Forward primer
Tm
Reverse primer
Tm
Product size

ATTGGGCTGGGATTTGAGGG

60.03

GGGACCTCCAGTCTCTTTGC

60.04

144

PCR template sequence:

CACACTAGCGGAAATTGGGCTGGGATTTGAGGGACAGGTCTGTGGACTGAAGGGAGGCAATTAGGGCAGGATGGCGGCATCTCAGCACCCTCCTCGTGAGGTGCCCTAGGACTAACCTGGGAGAAAGACCCCAGGCAGCAAAGAGACTGGAGGTCCCAGAGCACTCCCAAGACCTACGGCTTTGGGATGC

Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs

3

Interacting miRNAs (#binding sites)

mmu-miR-324-5p(1), mmu-miR-326-3p(1), mmu-miR-129-5p(1)

siRNAs for circular RNA silencing
Junction sequence

CAGCACCCTCCTCGTGAGGTGCCCTA

siRNA sets

NA

Protein-coding potential of circular RNAs

CPAT analysis

CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length

NA

NA

NA

NA

NA

ORF sequence:

NA

Peptide sequence:

NA

IRESfinder result

IRESfinder score

0.272499032

IRES/non IRES

non-IRES

riboCIRC information

riboCIRC ID

NA

NA

Evidence
Peptide sequence:

NA

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