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mmu_ciLmo7_465
Basic information of circular RNA
PanCircBase ID:
mmu_ciLmo7_465
mm39_Chr. Position ID:
chr14|102156140|102156605|+
Gene name:
Lmo7
Transcript:
ENSMUST00000100337.10
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
23
Exon/intron offsets:
0
Genomic length:
465
Exon/intron sizes in nt:
465
Flanking exon/introns:
chr14:102156140-102156644
Splice length:
465
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTACCATGACGCACGCCTTGTTCTTATTCTTCTCTATACCTTGTTGGAGAACCTAGCGGAGGACACCACACCCCATTTTCCTAGACACTCTCACCTCTGTATTGAATTCTAGTATGTTAGAAATTTGCCTTGCTATTTTAACTTTTCTCTTGTATAGCACCAAGCAGTTATTCCTTGGAATTTTGGAGTAGTCTTTCTGCTCCAACTTAGACCTCAGTCTTTGTTTTTTGTTTGTTTTCTTATTTTTTGTTTTTTGTTTTTTTTCGAGGCAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCAAGTGCTGGGATTTTTTTTTTTTTTTTTTTAAGGCACTGTGACTATCTTTTTGGCTGCTTACCATTAATCTCCTCTCTGTACGAAATGATAGAGAGACAGATGG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GGCACTGTGACTATCTTTTTGGC
60.37
AAATGGGGTGTGGTGTCCTC
59.89
150
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACTGTGACTATCTTTTTGGCTGC
59.5
AAATGGGGTGTGGTGTCCTC
59.89
147
PCR template sequence:
GCTGGGATTTTTTTTTTTTTTTTTTTAAGGCACTGTGACTATCTTTTTGGCTGCTTACCATTAATCTCCTCTCTGTACGAAATGATAGAGAGACAGATGGGTACCATGACGCACGCCTTGTTCTTATTCTTCTCTATACCTTGTTGGAGAACCTAGCGGAGGACACCACACCCCATTTTCCTAGACACTCTCACCTCTGT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
6
Interacting miRNAs (#binding sites)
mmu-miR-27b-3p(1), mmu-miR-27a-3p(1), mmu-miR-298-5p(1), mmu-miR-709(1), mmu-miR-381-3p(1), mmu-miR-495-3p(1)
siRNAs for circular RNA silencing
Junction sequence
GAGAGACAGATGGGTACCATGACGCA
siRNA sets
GTCATGGTACCCATCTGTC, CATGGTACCCATCTGTCTC, TCATGGTACCCATCTGTCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.968642427
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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