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mmu_ciLman1_1146
Basic information of circular RNA
PanCircBase ID:
mmu_ciLman1_1146
mm39_Chr. Position ID:
chr18|66126709|66127855|-
Gene name:
Lman1
Transcript:
ENSMUST00000048260.15
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
6
Exon/intron offsets:
0
Genomic length:
1146
Exon/intron sizes in nt:
1146
Flanking exon/introns:
chr18:66126708-66127855
Splice length:
1146
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAATCTTGCCATCTTTTCGTATTGAAAGCTTGTGAATGAACCGTACTGGTAGTGATATGTTTAGGGAACGTAGACGCAATCCCATTTCACTCTTAAAACGTCTTTGGGGCCTTCCCATTGCCCGTTCTACAGCCTAGGCAGTTGGAGCGGCAATGAAGAATGCTAATCACGCCAGTTAGGTGCATTGTGTAGTGACATATTTAAAGTTGAGGATAGAAGAAGTTAATTCCCAAATGTTTTAGGATACTTGAAAGTTGCTGTATCATGTAGAAATGAATTTGGGAACCCAAGGAAATATTATTTGGGGCCAAACTTTAAATGAAAATAATTACAATTTTCCACATATGTTGATAAATGAAGTTCCTCCACACCAATACTGCTTTGTACTCATACGGCACATTACCGTTTTAAGTACTTCCAAAACTGTAGATTGTTCTGTACAACCCAAGCAAGGAGGAAAAAGATGTATAGCCATTTTTTTTTTTCAGCTGTTTGCCAAGTCCAGACAAAGGCTGTTTCTCGGGGTCACACAGTCAACCCCAGAAAGTCCCGGTCTGGATTTGTGGTCCTGACTGTTGAGCACACGGCCTCTCCAGAGGTCACTCAGTCTGTAGTGCACCGAGTTCTGCTTCCCTGGACGCCTCTCCGGCTCTCCCCAGGACAAGCAGCATAGAGCAGCGCATCACACTTGAAATAATTCACTCCGCACAGTGGATGGGGCCAGCCAGGATGGTCACAGCTGCTCACTGCTGTGAGACCCAGTCTCCTTAGTTCCTGCCATTAGCTGCAACAACTTAGTACCGATCTGACTTAAACGGTTTAGGGAAAATAGAAGTATTATTGCTGTCCAGTTGAGAAAAGCAAGTGTGAGAGACCAGAGCTGGTGCGTTTGGAAATAGGTGGGCAGGGTTTTGAGTGATTTGAACACGGCATCATCATGCAGGAGACTGGGAACGCATGGGAAGAGCCTTAGACACTTCCTGTTATCTCCAGCTGAACATGTCTGCTGCGCTGACTTAGGGAGAAAGGTTTGGGGTAGTTCTGCTATCAGTCTTCCATAAGTAATAAATACAAATACCCGACAAGTCAGTCCTCAACTGTGAAACAAGTCACAGCACCTCCTAAAACCGTTTTTCAATTTGTA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
ACCCGACAAGTCAGTCCTCA
60.47
TGGGATTGCGTCTACGTTCC
60.11
154
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ACCCGACAAGTCAGTCCTCA
60.47
GGATTGCGTCTACGTTCCCT
59.82
152
PCR template sequence:
CTATCAGTCTTCCATAAGTAATAAATACAAATACCCGACAAGTCAGTCCTCAACTGTGAAACAAGTCACAGCACCTCCTAAAACCGTTTTTCAATTTGTAGTAAATCTTGCCATCTTTTCGTATTGAAAGCTTGTGAATGAACCGTACTGGTAGTGATATGTTTAGGGAACGTAGACGCAATCCCATTTCACTCTTAAAA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
9
Interacting miRNAs (#binding sites)
mmu-miR-335-3p(2), mmu-miR-26a-5p(1), mmu-miR-132-3p(1), mmu-miR-351-5p(1), mmu-miR-26b-5p(1), mmu-miR-182-5p(1), mmu-miR-382-5p(1), mmu-miR-29b-2-5p(1), mmu-miR-452-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTTCAATTTGTAGTAAATCTTGCCA
siRNA sets
AAGATTTACTACAAATTGA, CAAGATTTACTACAAATTG, ATTTACTACAAATTGAAAA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.69874489
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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