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mmu_ciKmt2e_687
Basic information of circular RNA
PanCircBase ID:
mmu_ciKmt2e_687
mm39_Chr. Position ID:
chr5|23705810|23706497|+
Gene name:
Kmt2e
Transcript:
ENSMUST00000094962.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
25
Exon/intron offsets:
0
Genomic length:
687
Exon/intron sizes in nt:
687
Flanking exon/introns:
chr5:23705810-23706521
Splice length:
687
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAACGACACTGACCTTTCAAGTCTGGTCCCTCATGGAAGTGGTGGAACATCAGACTGACTTTTCCCTGCCACATCAAGTGTCCGTTTGTGGTCTCTGTACTCTTCCTGTTTTCTCACTCTTGTGTTGAGCTGTGTGTACAGACAGTCCTGACTTAACCTTGCAGTTTTCTAAGTACCCTTCCGTAGTCAACATTTCTCACTCAAATTTATTCCTGACTTCATGGGATACTCTTAAGGACCTGCCAAGCAGCACTCCGTATGTCAAAACTCAGGTGACATTCATCCGGAATAGACTGTTCTCTCTATCCTGGTCTGTGATGAGCTGGTGGGCCTGCAGACCACTGTAAAATTGAGGGCCACACTGGGGTTACCCTTGGAAGTAAAAAAAGCATTTTAAGGCTAAATGGTTTAATGAACAATTTTTGTTTATTCAAAGCAGTTTATCTTTAGTTGGGTAAAGAAATTATATGAAATCAAAATTTGATAAGTTTTAAGGTTGTCAGAGGCTGAAAGTTGTTTGAAGAAAATGGAAAATAGGGACCATCAGGTCTAGAGAATGTATTTAAGCTTACACAAATGGAAAACCTTACACAATGTACTGAGAAAAAAAAAACTCACCGTTGTCGTCCTCACACTGCTTCCTGCCCTCTTACTAAATAACATTAAATTCCAGTGACATTCTCTCA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
AACTCACCGTTGTCGTCCTC
59.97
TGTGGCAGGGAAAAGTCAGT
59.45
149
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GTTGTCGTCCTCACACTGCT
60.25
TGTGGCAGGGAAAAGTCAGT
59.45
141
PCR template sequence:
TTACACAATGTACTGAGAAAAAAAAAACTCACCGTTGTCGTCCTCACACTGCTTCCTGCCCTCTTACTAAATAACATTAAATTCCAGTGACATTCTCTCAGTAACGACACTGACCTTTCAAGTCTGGTCCCTCATGGAAGTGGTGGAACATCAGACTGACTTTTCCCTGCCACATCAAGTGTCCGTTTGTGGTCTCTGTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
5
Interacting miRNAs (#binding sites)
mmu-miR-132-3p(1), mmu-miR-185-5p(1), mmu-miR-433-5p(1), mmu-miR-212-3p(1), mmu-miR-29b-2-5p(1)
siRNAs for circular RNA silencing
Junction sequence
TGACATTCTCTCAGTAACGACACTGA
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.866962062
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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