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mmu_ciKmt2e_2225
Basic information of circular RNA
PanCircBase ID:
mmu_ciKmt2e_2225
mm39_Chr. Position ID:
chr5|23683981|23686206|+
Gene name:
Kmt2e
Transcript:
ENSMUST00000196889.5
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
10
Exon/intron offsets:
0
Genomic length:
2225
Exon/intron sizes in nt:
2225
Flanking exon/introns:
chr5:23683981-23687399
Splice length:
2225
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATATTCATTTTTTTCATGTTGGTGTTTGAGAGTTAAAAGTTCGGGGCTTTTTTTTTTTTTTTAATGTTTTCATTTTATAACCCAGGTTGGCCTGGAACTTTTCATTCTTACTGCTTTAGCCTCCCAAATACTGCATTTACAGAGATGAGTCACCAACCCCAACAAAAGGAATGTGTGTGTGTGTGTGTGCATGCACATATATACAGGATGTCTATATGCATCTCGGGGAATGTTTATTCAATGGCATCTATGTGAAGGTCAGAGGGCAACCTCAGTTGTCAGCCCTAACTTCCACCTTATTGAGACCGACTGTCTTTGTTGTTCGCTCCAAGCCAACTGGCCTCCAAGCCTCCAGGGACTGCCTGCCCCTACAACTTGATATAGAACCACTGGAATTACACCATGTCCTGCTGTACCTAGCTTTGTAGATGATAAGGATTCTAATTCATATGAGGGTCCTTACATTTGCATGGCAAATGTTTTACCTGCTGAGCCATCTCCCTAGTCCATCACTGAGGTCTTAATACTGGGCTAAGATGCCTTGTGTGATTCCCTCCCCTCCCCTCGCCCTCCCCACGATCCTTTCAGAATTTTAAAGAATAGAATGGCTAACATGCCAGTGATAACTTTTGTAGTGTGACAACACGTAAAGATCTATTTCAACGCTTCTTGCTTGTTTCTATATTGCTGAATACTAAAGTAAGCCACATTGAACAAGTAAAAGCAAAATTGCTTAGCTATATAAGGTGTCAGTCAGGGATTTCCGTTCTTTAAGATTTTCAAGAACCTTGCCTCCCACTACCTAAGTTGCTTCCCACCTGCTAATTTCTAGAACCTGAAAAGGATTTGGTGGCTAAAACTGAGACTCCCCTTTATTAGATAGGACAGTTATGTCCCTGTGCTGCCACGTCACTTTTAACTATGCTCTGTTGATGTTGGGATGGTTTTAGAGACTTTTTTGGGGGGAGGGGGGGCTGTTGGTTTTTGGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGACCTCACTCTGTAGACCAGGTTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGTGTGTGCCTCCACTGCCCAGCTAGAGGCTTCTTCTGAAGTGTAGGATTCTTATGGAGAATTGATTTGATCTTGTGACCAATAATATCCTTCTCAGAGGTATAGAAATATCTTGCTATCTTTAGGGAAGTAAAAGTCTGTGCTGTTTAATACAATAAGCATTCTTAGTCTATAATTTGAGTATTTACTTATGCCACAAAAGATACATAAGATCTATGCCTCTTATATAGCATATTTTATCTGAAATCTAATATAAATCAATTTTAAACACATCAGGAAATGGGACTTCAAATGCATGTAAAAGGAATAGTTTTTTGTTGGTTTTGTTTTTTTTAATCTCTGCCTAAAAGGAGCTGGAGAGCTAGCTCAACAGTTCAGAGCACTAGCTGCTCTTGTAAAAAAAAAAATGTATTTGATCCCAGTACACACGTGGTAGTGGCCTACAACAATCTAGAACTCCAGTTTCAGGGGAGTCCATGGCCTTCCTCTGATTTCTCTGGGTTCCAAGCACACAGATAGAATGCAGACATGTATAGGTAAAATACCCATACACATAAAATATAGATTTAAAAACTTACTTAAAAAAGTTTTCCGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCAATGGAAAGAGAGGCCCATTGGTCAGGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAATGGGAATGGGTGGGTAGGGGAGTGGGGGGGGTGTGGGGGACTTTTGGGATACCATTGGAAATGTAGTTGAGGAAAATACGTAATACAAAAAAAAAAAAAGTTTTCCACCTTAATTGCTTTTGACTTAAGCAACTTGAGGTAGACACAAGTCTTATTTGTTTAAAGTAGTGTATTCTGGAGTCAGAGTGCCCATATCAAATGCTTGCTTATTTCTGTGTCTTAGAAATTTCTTAATCTGTTGTGTTTTTACTTACTTGCCTCTAAAAGAATAACAGAAAAGTTTTTGTTGTAGTTTGCTTGTCTTGTGACACTAGGAACTGAATTGAGGATCCTGTCCCCACAAGGCAAGCACTCTACAACAAAATAAGCCCTATTATACTACAACATTATTATAATATTCTGTTTGTAG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCCACAAGGCAAGCACTCTA
59.96
GGCCAACCTGGGTTATAAAATGA
58.97
167
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CCCACAAGGCAAGCACTCTA
59.96
GGCCAACCTGGGTTATAAAATG
57.6
167
PCR template sequence:
ACTAGGAACTGAATTGAGGATCCTGTCCCCACAAGGCAAGCACTCTACAACAAAATAAGCCCTATTATACTACAACATTATTATAATATTCTGTTTGTAGGTATATTCATTTTTTTCATGTTGGTGTTTGAGAGTTAAAAGTTCGGGGCTTTTTTTTTTTTTTTAATGTTTTCATTTTATAACCCAGGTTGGCCTGGAAC
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
30
Interacting miRNAs (#binding sites)
mmu-miR-499-5p(2), mmu-miR-3065-5p(2), mmu-miR-670-5p(2), mmu-miR-9-5p(1), mmu-miR-140-5p(1), mmu-miR-155-5p(1), mmu-miR-7b-5p(1), mmu-miR-34c-5p(1), mmu-miR-328-3p(1), mmu-miR-298-5p(1), mmu-miR-709(1), mmu-miR-320-3p(1), mmu-miR-339-5p(1), mmu-miR-10a-5p(1), mmu-miR-30d-5p(1), mmu-miR-214-3p(1), mmu-miR-24-3p(1), mmu-miR-191-5p(1), mmu-miR-297a-5p(1), mmu-miR-466d-3p(1), mmu-miR-705(1), mmu-miR-27a-5p(1), mmu-miR-377-3p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-669d-5p(1), mmu-miR-3470b(1), mmu-miR-466b-3p(1), mmu-miR-7a-1-3p(1)
siRNAs for circular RNA silencing
Junction sequence
ATTCTGTTTGTAGGTATATTCATTTT
siRNA sets
AATGAATATACCTACAAAC, TGAATATACCTACAAACAG, ATGAATATACCTACAAACA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.827255642
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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