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mmu_ciKif13b_4154
Basic information of circular RNA
PanCircBase ID:
mmu_ciKif13b_4154
mm39_Chr. Position ID:
chr14|64998250|65002404|+
Gene name:
Kif13b
Transcript:
ENSMUST00000100473.5
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
24
Exon/intron offsets:
0
Genomic length:
4154
Exon/intron sizes in nt:
4154
Flanking exon/introns:
chr14:64998250-65002451
Splice length:
4154
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTACCAGCATTGTGACATCATAGTAAATTCCTCGACACTCGATGGCTTATAGTGGATTCTTTTGAACAGAACTTTTTTAAAAAAGACTTTTTTATTTATTTATTTTATGTATATGAGTACACTGTGGCTGTCTTCAGTCACACCAGAAGAGGGCATCAGATCCCATCATAGATAGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTTTAGAAGAGCAGTCAATGCTCTTAACCGATGAGCCATCTCTCCAGCCCCTGAACAGAACTTTTAATAATAATGATGATGGTCAAGCCCATTTCTCTGAAATAGTTAAATGTATTGGCATTTGTTTATCTATTGTGTATGTTTGTGGATAGGTAATGCCACTGTGCACATGTAGAAGTCAGAGGACAACTTGTGAGACTTGGTTTTCTCTTTTCCTTCAACATATAGTCCTGGGGTTTGAAATCAGGGTGTTAGGTGATAGTGGAAAGGTCCTTTATGTAGCCATCTCCCTGGGTTTTCATTTTCAATCCCATTTTTTTATATAAAAATATTCTCTTATGTCATAGGCATTTTCTTCTATTGTTAAAAGTCTCACTACTTAATGATGTTTTAAAAGTAGTTTCTAAAAGGGTTAAAAATAAGCCTTTTGAAAAATATTTTTATTATTTTGTATATGTCTGTATATGTGTGAGTTTGTATGCCACAGGATGCAGTGCAAGTCAGAGGATAACTTGGAAAAGTGAGTTCTCTCTGCTGTTTGGGCCTTGACAGTTGAACTCGGGTCATTAGGCTTGAAGCAAGCACCTTTACTGGCTGAGCCTTCTTGTTGGGTTGAAAACGAGAAGTGTTCCAGGAAAACTTAGTATTGAGGAGTGGGACTTAAGGCAGACATACCAGGCAGCTTCATGTGCTCATGAACATGAGTTCAAAGCTGCACAGAGAGAGAGCACTGAATATGCAGGGGAGGACTGCCGGCTCACTGCTGGCCCTCCAGGGGCCTAGCAGTGTACTTGTGAGCTCCTTCACCTGGAACACGGAGAAGGGGTTAGCACCAGTGTTGTGGGTTTGCATGAGAATTAGGAGAGTGTTGTATAATTATAGCCCTGTGCTTGACACATGGCAGGAGTGTGTGTGGCTGAGTCCATGCAATGTAGACTATGGATCCCTCACTGATCGCCCAGGTGAGTGGCCATCTGTCAGTCTGTGCTGCTGACCAACAGTGACAGGGCAGGTCTCCATATGTAATTAATCTGTTCAGTCTTCACTGTGAAGGTTTTCTGTGTATGTCCACATACCCTCCTCTTGCTGATCCTTCCTTTTCCCAAACCGTCTTCTCTTCTGCTTTCATGTCACATATCATAGACAGTGGAAAACCTCAGAGTAATCGGTACACATAATTGGAAGTATTCTTTTTACGACACTGTGCCTCATTTCAAAAATCTAGTAGGCTGTTCTCTAGCGTTTTCATACTTTAAGATATAACACTAGGGGGCTGGAGAGATGGCTCAGTGATTAAGAATACTTTCTTCTCTGCCAGCTCTCAAGTTTGATTCCCAGCGCCCAGGTCACATGGCTCCCAATCACTAGTAACTCCATCCCTAGGCTGTCTGTGGGCCCTCCATCATGACATCTATTCACAAAGGCACACACACACACATAAACAAAAAGAATAAATCTTTAAAAACCCATATTATTAGAATTGCTTTCGAAATGAATGTTAAAAGCATTCAGAGAAAAACATGAATGGCTGAAGGAAAGAGTGTCCACTTAAATATTTAAATTTCAGATTAATGTAGAAGGTGGAAGCAAATGAGTTTCTTCTGATGCCTTCATCCACAGGTGAGAGACTTAGAGCAAAAGGGAAGGATTCTCAGCTACAGTATTATGCAGAGACATGGCACTGTAGGGAGACACAGACGAATTTCTGAGGGTGAAGATCTTTCCCTAGGCGTTTTCCTTGGCGGCCTTAGGAAGTCATCTTAGGAAGCCAGGCTCGGTGCCTTTTCTGAAGCTTACTGTCAGCTGGATGTGTCAGTGTCAGTTGTACCTCAGACCCTTGACGGAGAGTGTCCAGAGATGCCAGGAAGGCTTCAGCGAAGGACGAGCATCCTCACCTCAGTGCTGAGAAAGACACTCCAGCTTGGTAAAGGGTTCCTCTCTCAGGTGACAGCGTAAGGACTCAAGGTGGGGCTCTGCTTGAGCGAAGGCCCTTGTAGGAGGGAAGTGAGATGATAGAGGCTGTCACAGAAGCAGGGTAAGGGATGTTTGTAACCATGGTGAGATGCTGCAGGAACAGAGGGGACCACAATAGCAGGAATGGGATTCAGAGTAGTGGCTGAGAGAATGTCCCAATGTGTTCTCTGAGACAGTAAGCCTTCCTCTGTCTTCCATATTATGTTTCAAATATTCAGGATAGGCTAAAGAGACAGAAGGCAGCTACCTGAAATGATGAAGTGGCCTTAGACTTAATAAAGTGGGTAAAGGTGCTTGCCACATAAGCCTGAAGACCCACATTCAGTCTCTGGGACCCTAGTGAAGATGAAAGGTGAGAAGTGACTGTAAAGTTGTCATCTGACCTGCAGTGTGGACCATGGCATGTTCACCCTCATATGCACACACACAAGGGTAATAATAATAACAATGAAATAAAACATGTTTACTGAGTGACTTTTCCCATAAAATATCAGATGCATACTCCTTGGAAATGTTCAGATCAGTGACTGTCCATCAGATGTTGTTAGTCCGAGCCTGTGGCTGCTTGAGTGGATGTTCCTGGCTGTGCAAAACTCTTGGGAGCTTAATTTCTAGATGAGAGGAAAAGTAATTGACTTAAAATTGGATGTTTAAGTTCTGTTGCTTAGATGCTCTTCTCTGTTCCTACCATGCTTGGGGATACCAGGAACCCTTCCCAGTGTCTGCCTAAGTGTGCGGAGTCACAGGGCTTGTTCTGGACACCCAAGCAGGGTCAGTTCTGATCACATTTGCAGCTTGATTTCTTTAATTCTGTGAAAAGGGCATTGTATACAGGTCAGTTCTTATCTTTTTTGTTATTTGTTTGTATTGATTGATTGATTGATTGATTGATTGATTGTTTCAGGATAGGGTTTCTCTTTGTATCCCTGGCTGATCTGGACTTGCTCTGTAGATCAGGCTGGCCTAGAATGCACAGAAATTTGCCTGTCTCTGCCTCCCTAGGGATGGGATGAAAGGTGTGCATCACTACTGCCTGGCAGTTCTTATCTTTAAAATAAGACTGAATCCCAACTTTGGTACCCTGTGCTTTAACATATGTAGGCTGCAAGTGTTTTTCTGCACCAGTTGCTTAGTGACAGCTATAGGACATCACACTTTAAACAGTTGTTCACATTCCATATAGGTCTACTACCTTGTTCTTCATGGCACTTCAGAGTACTTATCCATGTACTTGATTGTCCAGTTGCTGGGGCAAAGGTGACTTACAGTTTAGCCCTTGACCAAGCTTGGCCAGTTTAAATCCCTGTCCCACAGGATTGACATTATTTGTTTCATAACCATGATCTCTGTTGGAAGTAACTTCTCACTTAGTAGGTTGAAATAAAAGCTCTCATGGTTGCCTTGTCTGGAAGTTGCCCTTTTTCAGTCTAGGTCTCATTAGGTAGCCCCAGAACTCTATGCAGCCCAGGATAACCTCAAGCATGGAGATCTCCCTGCCAATTTCTGGAGTACTAAAGTTACAGTGTGAACCACCACACCTGGCTCAGTTCAACACTTTTTATTAGACACTGTTTGCATTTCCTTTGCTTGTAAGTTTTCATTTACCTGGTGTTTTGTCACATACCAGCACCAGAATTTTCCAGGCTGAGCCAGGAGGATTGCCTTGAATTCAAAATTAGGCCAGTGTAGGTAGGCCAGAGCTACATAGCTACATAGCAAAGCTATATAGCAAGCCCCTATTGTTCATTAAAATAATTTTCTTTTAGTTTCTAGTTATTTAGGAATTATAGAAAAATATGCTCATTTTGATTTTCTGTCTATTTGAAAGAAAATTCATTTTCCTGACTAGGTTAGAATGTATGCTTTAGTACTTAACAGTTATGAGGTAGATGAAAGCCAATTGCATTTTTCTATATCAGCCTATAGGGGTCTCTCTAAACCAGAGTTTTGAAACTCATGAAGCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TGAGGTAGATGAAAGCCAATTGC
59.3
ATCCACTATAAGCCATCGAGTGT
59.1
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
ATGAGGTAGATGAAAGCCAATTGC
59.66
TCCACTATAAGCCATCGAGTGT
58.7
140
PCR template sequence:
TTAGTACTTAACAGTTATGAGGTAGATGAAAGCCAATTGCATTTTTCTATATCAGCCTATAGGGGTCTCTCTAAACCAGAGTTTTGAAACTCATGAAGCTGTACCAGCATTGTGACATCATAGTAAATTCCTCGACACTCGATGGCTTATAGTGGATTCTTTTGAACAGAACTTTTTTAAAAAAGACTTTTTTATTTATT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
59
Interacting miRNAs (#binding sites)
mmu-miR-141-3p(2), mmu-miR-298-5p(2), mmu-miR-181b-5p(2), mmu-miR-541-5p(2), mmu-miR-224-5p(2), mmu-miR-466a-5p(2), mmu-miR-1187(2), mmu-miR-466p-5p(2), mmu-miR-7a-1-3p(2), mmu-miR-134-5p(1), mmu-let-7a-5p(1), mmu-miR-15a-5p(1), mmu-miR-200a-3p(1), mmu-miR-1a-3p(1), mmu-miR-429-3p(1), mmu-miR-206-3p(1), mmu-miR-200b-3p(1), mmu-miR-181a-5p(1), mmu-miR-103-3p(1), mmu-let-7b-5p(1), mmu-miR-150-5p(1), mmu-miR-135a-5p(1), mmu-miR-30e-5p(1), mmu-miR-19b-3p(1), mmu-miR-26a-5p(1), mmu-miR-122-5p(1), mmu-let-7c-5p(1), mmu-miR-15b-5p(1), mmu-miR-146a-5p(1), mmu-miR-19a-3p(1), mmu-miR-30c-5p(1), mmu-miR-709(1), mmu-miR-139-5p(1), mmu-miR-381-3p(1), mmu-miR-128-3p(1), mmu-miR-24-3p(1), mmu-miR-433-3p(1), mmu-miR-26b-5p(1), mmu-miR-494-3p(1), mmu-miR-29b-1-5p(1), mmu-miR-199b-3p(1), mmu-miR-199a-3p(1), mmu-miR-340-5p(1), mmu-miR-297a-5p(1), mmu-miR-107-3p(1), mmu-miR-383-5p(1), mmu-miR-466d-3p(1), mmu-miR-98-5p(1), mmu-miR-680(1), mmu-miR-29b-2-5p(1), mmu-miR-342-3p(1), mmu-miR-377-3p(1), mmu-miR-369-3p(1), mmu-miR-669d-5p(1), mmu-miR-3087-3p(1), mmu-miR-540-3p(1), mmu-miR-574-5p(1), mmu-miR-146b-5p(1), mmu-miR-181d-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AACTCATGAAGCTGTACCAGCATTGT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.823563781
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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