top of page
mmu_ciKat14_40
Basic information of circular RNA
PanCircBase ID:
mmu_ciKat14_40
mm39_Chr. Position ID:
chr2|144215289|144215329|+
Gene name:
Kat14
Transcript:
ENSMUST00000147747.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
40
Exon/intron sizes in nt:
40
Flanking exon/introns:
chr2:144215289-144217764
Splice length:
40
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTGCGTAACTGTGGGTGTGGTGTGTTGGTAGAGAGTTGTT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
NA
NA
NA
NA
NA
PCR template sequence:
TGTGTTGGTAGAGAGTTGTTGTGCGTAACTGTGGGTGTGG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
NA
Interacting miRNAs (#binding sites)
NA
siRNAs for circular RNA silencing
Junction sequence
GTAGAGAGTTGTTGTGCGTAACTGTG
siRNA sets
TTACGCACAACAACTCTCT,CAGTTACGCACAACAACTC,AGTTACGCACAACAACTCT
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.415398211
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page