top of page
mmu_ciIws1_623
Basic information of circular RNA
PanCircBase ID:
mmu_ciIws1_623
mm39_Chr. Position ID:
chr18|32219476|32220099|+
Gene name:
Iws1
Transcript:
ENSMUST00000025243.5
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
7
Exon/intron offsets:
0
Genomic length:
623
Exon/intron sizes in nt:
623
Flanking exon/introns:
chr18:32219476-32220122
Splice length:
623
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGCTCTTCTAGGTTACCCTTCTCCCCTCCTGCCCTCAACCAAATTGATGGTGTGGCAAATCTTTCTCTTTAAGCTTAGACTACCATAAAAGGTTCCGTGCTTTCTGTAATAATCTTTTCCTGAAAAAATTTTAATTCTATAAATAATCTTAACTGAAAAGATTCAGCCACATTATTAGGAAAAGAAATTGTAAGTAAAAGAGTGAATGGGAAGTTTGTTTTCATAGCTATCTGGTTCATGAACACAGTTGATGTCTATTCAAATATAAAGTGTATAAAAAGGAGAAATTATTCAAAAAATATTTTTGGTAATGGATCATATCCTTCCTTGAAGAGAAACCAACATTTTTCAGCTATATTTTGTTACTAGAATAAACTCCAAAAACTTGAAAACTTGTCAGTATTGAAAATGACATTGCCTCTTGGTTCTGATGGTTAAAAAGCAATGATGTAACAATTTTATGGGTTTGATTGACTAAACAGATAAGGAGTTCGGCTTTGTGCAGACAGCTTATGCTTTCTTCTTAGAACATAATTTCTATTTCAAGGTTTAGAATTGTGGTGATTATAATTGCCTATTAAGAGTTAATGTTGTTTTATTTTAAACCTTTTCTTTTTTTG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
TTCAAGGTTTAGAATTGTGGTGA
56.3
TTGCCACACCATCAATTTGG
57.16
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCAAGGTTTAGAATTGTGGTGA
55.57
TTTGCCACACCATCAATTTGG
57.88
140
PCR template sequence:
TTCTTAGAACATAATTTCTATTTCAAGGTTTAGAATTGTGGTGATTATAATTGCCTATTAAGAGTTAATGTTGTTTTATTTTAAACCTTTTCTTTTTTTGGTAAGCTCTTCTAGGTTACCCTTCTCCCCTCCTGCCCTCAACCAAATTGATGGTGTGGCAAATCTTTCTCTTTAAGCTTAGACTACCATAAAAGGTTCCG
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
4
Interacting miRNAs (#binding sites)
mmu-miR-429-3p(1), mmu-miR-200b-3p(1), mmu-miR-200c-3p(1), mmu-miR-495-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTTCTTTTTTTGGTAAGCTCTTCTA
siRNA sets
AGAGCTTACCAAAAAAAGA,AAGAGCTTACCAAAAAAAG
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIIWS1_623_ORF_3
0.5779
-0.463011659
0.004911544
108
ORF sequence:
ATGTTGTTTTATTTTAAACCTTTTCTTTTTTTGGTAAGCTCTTCTAGGTTACCCTTCTCCCCTCCTGCCCTCAACCAAATTGATGGTGTGGCAAATCTTTCTCTTTAA
Peptide sequence:
MLFYFKPFLFLVSSSRLPFSPPALNQIDGVANLSL
IRESfinder result
IRESfinder score
0.928729092
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
bottom of page