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mmu_ciInsrr_220
Basic information of circular RNA
PanCircBase ID:
mmu_ciInsrr_220
mm39_Chr. Position ID:
chr3|87718941|87719161|+
Gene name:
Insrr
Transcript:
ENSMUST00000029711.9
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
16
Exon/intron offsets:
0
Genomic length:
220
Exon/intron sizes in nt:
220
Flanking exon/introns:
chr3:87718941-87720259
Splice length:
220
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGTCCAGGGACACGGGGGTGTGGGAAAGAAGGTGGGCACAGGAGAGTGGAGCTCCAGAGAGCCTTCTTGGAGAAGGTGGCCTTGGGAACAGAGCCCTTCAGATGACAAGTTAAAGGGAGTCCTTGTCGGTGTAGAGCACACCTGAAATGACATTGTAGCCTTCGGTGAAGAAACAGCACCCTAATCTGATGGTCTGGGAGTGACGGCTAGGGAGATG
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCCTTCGGTGAAGAAACAGC
59.76
CAAGGCCACCTTCTCCAAGA
59.6
147
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
TCCTTGTCGGTGTAGAGCAC
59.4
TCCTGTGCCCACCTTCTTTC
59.89
144
PCR template sequence:
AGTCCTTGTCGGTGTAGAGCACACCTGAAATGACATTGTAGCCTTCGGTGAAGAAACAGCACCCTAATCTGATGGTCTGGGAGTGACGGCTAGGGAGATGGTAAGTCCAGGGACACGGGGGTGTGGGAAAGAAGGTGGGCACAGGAGAGTGGAGCTCCAGAGAGCCTTCTTGGAGAAGGTGGCCTTGGGAACAGAGCCCT
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
3
Interacting miRNAs (#binding sites)
mmu-miR-211-5p(1), mmu-miR-204-5p(1), mmu-miR-207(1)
siRNAs for circular RNA silencing
Junction sequence
GGCTAGGGAGATGGTAAGTCCAGGGA
siRNA sets
CCTGGACTTACCATCTCCC,CTGGACTTACCATCTCCCT,ACTTACCATCTCCCTAGCC
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
CIINSRR_220_ORF_1
0.7271
0.020299522
0.04665185
111
ORF sequence:
ATGGTAAGTCCAGGGACACGGGGGTGTGGGAAAGAAGGTGGGCACAGGAGAGTGGAGCTCCAGAGAGCCTTCTTGGAGAAGGTGGCCTTGGGAACAGAGCCCTTCAGATGA
Peptide sequence:
MVSPGTRGCGKEGGHRRVELQRAFLEKVALGTEPFR
IRESfinder result
IRESfinder score
0.248508684
IRES/non IRES
non-IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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