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mmu_ciIlkap_2060
Basic information of circular RNA
PanCircBase ID:
mmu_ciIlkap_2060
mm39_Chr. Position ID:
chr1|91316268|91318328|-
Gene name:
Ilkap
Transcript:
ENSMUST00000187049.7
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
3
Exon/intron offsets:
0
Genomic length:
2060
Exon/intron sizes in nt:
2060
Flanking exon/introns:
chr1:91316168-91318328
Splice length:
2060
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAGGCAAACAGTTTTGAGGTGTGGCTGGATAACCCTTATTGTGCCACTATGTAAACTGTGTGCACGGGTTTTAGCAGGATTTTGAATGACGTTAAAGTATAGTATAGATGAGGTCTATTAAAATTGAACAGACATGCTCAGATAGAAGCTGAGATTAGAGACTTCAGTACTGTATCAGCCATTTTGTTTCTTGTCCTTAACTTTGCCTTCACCTGCTAGGCTGATTTTTTTAAGAATTCAGATCCAGGGGGCTGGAGAGATGGCTCAGCAGTTAAGAGGACTGACTGTTCTTCCAAAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCCATAATTGGATTTGGTGCCCTCTTCTGGTGTGTCTGAGGACAGCTACAGTGTACTCATAAATATAAATACAAATACAATAAGAATTAAGATCCAGGCATGTGGCTCCTGCCTGTAATCTCTATTCAGAAGGTTCAAGCAGAAGGAACTTGAGTTCCAGACTAGCCTGGGCTATGTAATGAGACCATGTCTCAAAATAATAACCATCATTTAAAAGGTCAAAAATTCACTCTGAACTTTCATATTAAAAATTTTTCAGTTTGTTACTCTGATTTGCCTTATGTCCCCCACATGACAGTGTTCTGTTTTGTGTCAGAAGGGAAGAGTGATGGGTGTACTGTTATAGCTGCAGACTGTTTATTCCGTCTAACTGACAGCCTCTTTGCTGTGTGGGGACTGGGGAGAGGCTGCAGGTGGTTCTATTTTTTTGAGGTTAAAAGTTCGATTTGTTGCCAAATAGAATATTTACTACTTTTCTAAATAGTTTTTTTTTAATCCCTGTGAAATCAGTAGGATTGCTTTTAAAAAGAACATTTAATTGTCTTTTATGAGAATCCCAAAGTTTTCAGGACTAGGGACTCGTATGAAAAACTGCAGCATGCTTCTACCAGTCAGCCTTGAAAACTTTCCTAATAGAGTCAGTGCTCTTAATTATATGAGGGTAATATGCAAATCAAGTGTTTTTGTAGAGTTAACTTTAAAATAATTCAGTCTGTATTGGTACTCATTAGAAGACTTAACACAGCGTGTATAATCTGGTACTCAGTATTTTGGATTTCTTGGAAAACTGATTCTTCTCAAGAGGGCAGATAGTCTGTGGGAGTTGACCATGTGCTAGTCTGTAAGACAAGGCCTAGTGGAGAGTCTTTAACATATAGACCGTGTCCTGTGGTGCAGTGGAACTCACCTAGAGGCTGTTAATAGCAGTGTACTTCTCTATTTTGCAATTAGAAAGGATTCAGAAAGGAAAACTGGAGCCCAAACAGTAAGCAGCGTGATGCTGATGGAAAGACACTGAGGAGACTTAAAATGTCCATGACATTTTCTCATTAAGTTGCTCTTTTTTATGCAGTGTGTCATGCATTTTGTAATACCATTGTGGATATGCTCTTTTGCAAGGAGATGAATCTTAGCACAGAGCTTTTTCTTCTTTTTCCTAAGAAGTAGGTTGAATGAATGGCTACAGAGAGCATTTAGGGACATTTGGTGTAACTGGCACCACAGTGGCTGGTTTATTTCTTGTCCCTATCGATGTTCACACAGTCTGGAGGGCATTCTCTCACCATGTTATGAAGAAACTGTGGCTGGAAGATTAGAAACTGAAGCTAGACCTTATGGTCCCGCACACATGAGTGCTGCTGGAGCAGCTAGGTTTGCTTGATAGAGAGGTAGGGCGGCCCCAGCAGCACTCTGTGCTTTTAGCTCATTGTAAGCCTTTTAGGAGTGTAGTGTTTTGTCTGGACTGGTTCAGGACATACAAGTTTGCTGCAGCTTCTGGAAATGTCCCTGTTAGTCACTAAGGGTCTGTGGATGTCCTACATCATGAATATGCTACAGGCTAGAAGTTTAAGTGTGCTATGCTACTGAGAAATCTCCAGGGCAGAGACTCTTAGGTCCTTACTCAGTGTGGATGCTGCCCTATCTTCTAGCTTTCTAACCAGAAGTTCTAGCCTGGGCACAGTATGTGTTGGTCCTTGCCTGAAGTGCAGTTATGTCT
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CCAGAAGTTCTAGCCTGGGC
60.11
ATCCTGCTAAAACCCGTGCA
59.96
141
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CAGTGTGGATGCTGCCCTAT
59.82
ATCCTGCTAAAACCCGTGCA
59.96
176
PCR template sequence:
TTACTCAGTGTGGATGCTGCCCTATCTTCTAGCTTTCTAACCAGAAGTTCTAGCCTGGGCACAGTATGTGTTGGTCCTTGCCTGAAGTGCAGTTATGTCTGTAGGCAAACAGTTTTGAGGTGTGGCTGGATAACCCTTATTGTGCCACTATGTAAACTGTGTGCACGGGTTTTAGCAGGATTTTGAATGACGTTAAAGTA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
28
Interacting miRNAs (#binding sites)
mmu-miR-101a-3p(2), mmu-miR-16-5p(1), mmu-miR-15a-5p(1), mmu-miR-200a-3p(1), mmu-miR-141-3p(1), mmu-miR-200b-3p(1), mmu-miR-103-3p(1), mmu-miR-223-3p(1), mmu-miR-200c-3p(1), mmu-miR-322-5p(1), mmu-miR-15b-5p(1), mmu-miR-335-5p(1), mmu-miR-216a-5p(1), mmu-miR-217-5p(1), mmu-miR-101b-3p(1), mmu-miR-132-3p(1), mmu-miR-320-3p(1), mmu-miR-433-3p(1), mmu-miR-212-3p(1), mmu-miR-182-5p(1), mmu-miR-107-3p(1), mmu-miR-29b-2-5p(1), mmu-miR-1187(1), mmu-miR-335-3p(1), mmu-miR-452-3p(1), mmu-miR-3065-5p(1), mmu-miR-1904(1), mmu-miR-3105-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TGCAGTTATGTCTGTAGGCAAACAGT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.814296503
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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