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mmu_ciIer3ip1_842
Basic information of circular RNA
PanCircBase ID:
mmu_ciIer3ip1_842
mm39_Chr. Position ID:
chr18|77027365|77028207|+
Gene name:
Ier3ip1
Transcript:
ENSMUST00000026487.6
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
2
Exon/intron offsets:
0
Genomic length:
842
Exon/intron sizes in nt:
842
Flanking exon/introns:
chr18:77027365-77028208
Splice length:
842
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTAAGAAGAACTTAGAGGACGTTATAAGTTACAGTCCGTGGTCCAGTTTCAGACCCCAAAGCGTGGGTGAATGTGAGCTCTCAGGTTCTCTTTGTGTGGAACATGGACTTCTGTAACCTGAATTTACTGCTTCAGAGTTGCTGGCCGCTTTCTTCCATTGCATCTGACTTCTAGGAAGTTCAGTGTTACTAGTACACTCTGTGTGTTTCCTGTCAGGGCAGAAAGACAAAATGATGTCCTTACTGCTTAGGAACTGTAGCTGCCATCTTGTAATGTAGAGTCATGAAGAAGTTTCCAAGAGTGAAATAAAGGCTCTGTATTGTATTGAAAAATACTTTGGAGCAACTCTTCAATCAAGAAAGAGTTCAGATACCTTGTATTTAAACAATGGGATTAGAGCCTTTTCAAACCTTAATCATAGCTTTGGGTTTATTGTTAATAATTTTATTCTTTTTGATGAAACTGCAGAACCTTCCTTGAACTGTATTTCTGCTCCAGTGTGCAGCTGTGTGGATCTGTCTGATCCTTTGTGTTCCCAGAGCTGCAGCAGCACCATCCAGTGGTGCCTCCAAACACCCAGACATATGGTGGGGTGGGGCATGGTGGTCCACACCTGCAGTCCCATCCCTTGGGAGGGCTACAGAGGCATTCCTGGTTCACCTCCATCCAACAAAAGAAAATGTCTTTGGTTTTATGGTCATTTATTTTTCTGTTATTACTATTACTATATGATTATGATGGCATATTTATAGATACTTCCATACTCCTCGGAAGCTATTTATTGCTGTTTAATTTTTTGTTTGTTTGTTTTTTATACTAACAAACTTTATTTTTTTCTTTTA
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
CTTCCATACTCCTCGGAAGCT
58.96
AGAGCTCACATTCACCCACG
60.04
168
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
CTTCCATACTCCTCGGAAGCT
58.96
CACATTCACCCACGCTTTGG
60.04
162
PCR template sequence:
ATATTTATAGATACTTCCATACTCCTCGGAAGCTATTTATTGCTGTTTAATTTTTTGTTTGTTTGTTTTTTATACTAACAAACTTTATTTTTTTCTTTTAGTAAGAAGAACTTAGAGGACGTTATAAGTTACAGTCCGTGGTCCAGTTTCAGACCCCAAAGCGTGGGTGAATGTGAGCTCTCAGGTTCTCTTTGTGTGGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
8
Interacting miRNAs (#binding sites)
mmu-miR-181a-5p(1), mmu-miR-23a-3p(1), mmu-miR-181b-5p(1), mmu-miR-381-3p(1), mmu-miR-382-3p(1), mmu-miR-384-3p(1), mmu-miR-377-3p(1), mmu-miR-323-3p(1)
siRNAs for circular RNA silencing
Junction sequence
TTTTTTTCTTTTAGTAAGAAGAACTT
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.908111642
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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