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mmu_ciIca1_760
Basic information of circular RNA
PanCircBase ID:
mmu_ciIca1_760
mm39_Chr. Position ID:
chr6|8669933|8670693|-
Gene name:
Ica1
Transcript:
ENSMUST00000156695.8
CircRNA type:
Circular intronic (ci)RNA
Exon/Intron count:
1
Exon/intron indexes:
7
Exon/intron offsets:
0
Genomic length:
760
Exon/intron sizes in nt:
760
Flanking exon/introns:
chr6:8658314-8670693
Splice length:
760
Other database IDs:
Human Ortholog IDs:
Mature spliced Sequence:
GTATGAAAGCCAGAGACTCACTAGGAAGTCTTGTGAAAAGCCAGTTTTGTTTGTATTATAAACCAAACCCATGGCAGTATCATCCCAGACCTCTGTCAGAGAGAACTATGTCTCTGACGCATCCTTTCACTATGTATCCTGATAATCCCTATTTATCTGACATTGTTGAAGACAAGCTCACTCAAGAACAGGGAACTGATTACTTTTGGTTTAGTTTAGATTAGTTTTGTTTTTCCATTACCTGGGATGGAATTCAGGGCTTTAAAACATGCTAGATAGTCTACCACTGAGTTACATCCCTACTTTTAATTATTAATTCTGAATATGCAGATCTGAGAAGATGTTTCTTTATGAATACACACACACACACACACATATCACTTTATTCTAAAGGAACCTCCAACATAAGATTGGAATTTTCCATGGGGCTATAATAATATTTTCTAATTGAAAGAGCTACAGTAAACTCAAGGATCCTTGACTCTAAAAGGGGGGTTGTGTGCAGTATCTGATTCGCAGTATTGAAGCTGATTTGGAACTTGTCTGCCCCGATGGCTACCAGAGATGAATGCACATCAAGATAAGAAAGTGATTGTCATTCCAGAAGGACTTTAAGAATGATCGGAGAGAACAGTGGGTGCCTTGTTTTTGGGGTGTATCTTTTAAGGAAAACTATCATCAGGCAAGAATAAACCTAGCAAAAATAAGCCTTGAAATTGCTCACTCCTGATTTTTGAGGAAATGTATAGGTCCACATAGC
Divergent primers for circular RNA PCR
Primer Set-1
Forward primer
Tm
Reverse primer
Tm
Product size
GCCTTGAAATTGCTCACTCCTG
60.09
TGGGATGATACTGCCATGGG
59.23
140
Primer Set-2
Forward primer
Tm
Reverse primer
Tm
Product size
GCCTTGAAATTGCTCACTCCT
58.83
TGGGATGATACTGCCATGGG
59.23
140
PCR template sequence:
TTTTAAGGAAAACTATCATCAGGCAAGAATAAACCTAGCAAAAATAAGCCTTGAAATTGCTCACTCCTGATTTTTGAGGAAATGTATAGGTCCACATAGCGTATGAAAGCCAGAGACTCACTAGGAAGTCTTGTGAAAAGCCAGTTTTGTTTGTATTATAAACCAAACCCATGGCAGTATCATCCCAGACCTCTGTCAGA
Note: Users can design additional primers for provided template sequence using Primer3 or NCBI primer-blast.
miRNAs associated with circular RNAs
No of miRNAs
11
Interacting miRNAs (#binding sites)
mmu-miR-124-3p(1), mmu-miR-429-3p(1), mmu-miR-200c-3p(1), mmu-miR-411-3p(1), mmu-miR-541-5p(1), mmu-miR-466a-5p(1), mmu-miR-1187(1), mmu-miR-466p-5p(1), mmu-miR-190b-5p(1), mmu-miR-129-5p(1), mmu-miR-574-5p(1)
siRNAs for circular RNA silencing
Junction sequence
AGGTCCACATAGCGTATGAAAGCCAG
siRNA sets
NA
Protein-coding potential of circular RNAs
CPAT analysis
CPAT ORF ID
CPAT Fickett
CPAT Hexamer
Coding probabilty
ORF length
NA
NA
NA
NA
NA
ORF sequence:
NA
Peptide sequence:
NA
IRESfinder result
IRESfinder score
0.845532204
IRES/non IRES
IRES
riboCIRC information
riboCIRC ID
NA
NA
Evidence
Peptide sequence:
NA
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